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  • CCDC92
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:123.8 nTPM
HPA Brain:102.5 nTPM
GTEx:123.8 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:48.2 nTPM
Allen mouse:8.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.5
Sample id Sample description nTPM
Amygdala
nTPM: 62.1
2517 Female, age 94, left hemisphere 85.5
1987 Female, age 91, left hemisphere 71.1
2514 Male, age 75, right hemisphere 57.8
2814 Male, age 76, right hemisphere 49.4
2695 Female, age 67, right hemisphere 47.0
Basal amygdala
nTPM: 102.5
2685 Female, age 94, left hemisphere 113.3
2609 Male, age 75, right hemisphere 109.8
2243 Female, age 91, right hemisphere 101.2
2827 Female, age 67, right hemisphere 100.3
2110 Male, age 80, left hemisphere 97.9
1955 Male, age 76, both hemispheres 92.2
Central amygdala
nTPM: 74.4
2239 Male, age 80, left hemisphere 87.9
2826 Female, age 94, left hemisphere 80.9
2701 Female, age 91, right hemisphere 71.8
2515 Male, age 75, right hemisphere 69.5
1905 Male, age 76, both hemispheres 61.8
Corticomedial amygdala
nTPM: 98.2
2535 Female, age 67, right hemisphere 140.4
2429 Female, age 94, left hemisphere 104.6
2829 Male, age 80, left hemisphere 104.1
2242 Female, age 91, right hemisphere 98.7
2428 Male, age 75, right hemisphere 72.1
2240 Male, age 76, both hemispheres 69.3
Lateral amygdala
nTPM: 83.4
2256 Male, age 80, left hemisphere 115.6
2534 Female, age 94, left hemisphere 91.5
2255 Female, age 91, right hemisphere 85.5
1883 Male, age 76, both hemispheres 74.8
2516 Male, age 75, right hemisphere 67.8
2830 Female, age 67, right hemisphere 65.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.8
Samples: 181

Max nTPM: 274.7
Min nTPM: 48.7
Std nTPM: 38.7
Median nTPM: 119.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 274.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 249.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 214.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 208.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 207.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 201.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 200.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 192.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 188.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 182.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 181.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 181.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 175.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 173.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 172.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 170.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 170.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 170.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 168.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 166.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 166.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 165.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 161.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 161.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 159.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 157.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 156.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 156.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 152.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 151.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 151.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 149.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 149.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 148.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 147.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 146.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 145.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 143.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 142.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 142.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 142.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 140.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 140.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 139.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 138.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 138.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 137.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 137.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 136.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 135.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 135.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 134.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 134.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 133.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 133.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 132.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 132.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 131.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 131.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 130.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 129.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 129.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 127.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 126.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 125.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 124.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 123.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 123.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 123.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 121.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 120.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 119.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 119.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 119.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 117.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 117.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 117.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 117.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 117.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 116.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 114.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 113.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 111.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 111.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 110.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 110.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 110.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 109.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 107.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 107.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 106.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 104.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 103.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 100.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 100.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 100.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 100.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 100.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 99.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 98.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 98.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 97.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 97.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 94.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 94.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 94.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 91.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 91.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 88.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 86.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 85.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 85.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 85.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 83.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 81.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 79.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 77.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 74.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 73.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 73.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 70.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 70.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 69.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 69.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 66.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 66.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 65.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 63.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 61.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 48.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 100.4
FF:10151-102I7 76 years, female 100.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.2
Pig sample Sample description nTPM
Amygdala
nTPM: 30.2
Samples: 4

Max nTPM: 40.3
Min nTPM: 23.5
Sample A Female 40.3
Sample B Female 23.5
Sample C Male 28.4
Sample D Male 28.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 48.2
Samples: 4

Max nTPM: 54.1
Min nTPM: 42.8
Sample A Male 49.0
Sample B Male 47.0
Sample C Female 54.1
Sample D Female 42.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.4
74658111 Antisense, RP_060220_02_C07, Mouse strain C57BL/6J (56 days, male) 12.2
671251 Antisense, RP_040914_02_B10, Mouse strain C57BL/6J (56 days, male) 4.7

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