MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:35.9 nTPM
GTEx:13.3 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:9.2 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2828 Female, age 72, unknown 39.2
2411 Female, age 72, unknown 38.4
2019 Male, age 18, unknown 36.7
1870 Female, age 42, unknown 34.8
1830 Male, age 51, unknown 33.8
1833 Male, age 53, unknown 29.8
1827 Male, age 72, unknown 27.4
2219 Male, age 76, both hemispheres 26.7
2666 Male, age 74, left hemisphere 26.6
2586 Male, age 75, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 32.0
2750 Male, age 76, both hemispheres 40.2
1828 Male, age 53, unknown 32.0
2016 Female, age 72, unknown 31.2
2047 Male, age 72, unknown 29.8
2298 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 27.2
1848 Female, age 42, unknown 28.7
1890 Male, age 53, unknown 27.6
2849 Male, age 72, unknown 27.5
2097 Female, age 72, unknown 25.2
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Periaquaductal grey, anterior
nTPM: 25.6
1947 Male, age 18, unknown 29.0
1795 Male, age 51, unknown 24.9
2502 Female, age 75, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 27.8
2850 Male, age 76, both hemispheres 33.2
2464 Female, age 72, unknown 30.8
1840 Male, age 53, unknown 24.9
1831 Male, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 28.7
2272 Male, age 74, both hemispheres 30.5
2053 Male, age 18, unknown 28.9
2140 Male, age 76, both hemispheres 26.6
Pretectal area
nTPM: 29.3
1815 Male, age 53, unknown 33.4
2224 Female, age 72, unknown 33.3
2667 Female, age 75, unknown 32.4
2316 Male, age 76, right hemisphere 32.2
2825 Male, age 18, unknown 30.9
1817 Female, age 42, unknown 29.3
2007 Male, age 72, unknown 28.5
2273 Male, age 74, both hemispheres 27.8
2407 Male, age 75, both hemispheres 24.9
1816 Male, age 51, unknown 24.8
1944 Female, age 72, unknown 24.5
Red nucleus
nTPM: 35.9
1865 Male, age 51, unknown 43.9
2823 Male, age 76, right hemisphere 43.7
2503 Female, age 72, unknown 40.1
2769 Male, age 72, unknown 39.2
1821 Female, age 72, unknown 39.1
1954 Female, age 42, unknown 39.0
2227 Male, age 72, unknown 36.6
1904 Male, age 53, unknown 34.5
2725 Female, age 75, unknown 33.0
2588 Male, age 74, left hemisphere 30.3
2785 Male, age 18, unknown 28.3
2584 Male, age 75, left hemisphere 23.7
Substantia nigra
nTPM: 29.8
2699 Male, age 18, unknown 33.7
2409 Female, age 72, unknown 33.0
1889 Female, age 72, unknown 32.0
1851 Male, age 51, unknown 31.7
2241 Male, age 72, unknown 31.5
1916 Female, age 42, unknown 30.8
2590 Female, age 75, unknown 28.8
2665 Male, age 74, both hemispheres 26.6
1941 Male, age 53, unknown 25.6
2583 Male, age 75, right hemisphere 24.5
Superior colliculus
nTPM: 27.4
1995 Male, age 72, unknown 33.5
1913 Female, age 42, unknown 32.4
2587 Male, age 74, left hemisphere 31.4
2668 Female, age 75, unknown 29.6
1895 Male, age 76, right hemisphere 29.4
1796 Male, age 53, unknown 28.1
1839 Male, age 51, unknown 27.5
2087 Female, age 72, unknown 23.3
2261 Male, age 18, unknown 20.7
2664 Male, age 75, both hemispheres 18.0
Ventral tegmental area
nTPM: 31.6
2223 Female, age 72, unknown 38.8
2021 Male, age 53, unknown 35.0
2410 Female, age 72, unknown 33.0
2218 Male, age 76, both hemispheres 32.5
1942 Male, age 51, unknown 25.6
1915 Female, age 42, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 183

Max nTPM: 27.3
Min nTPM: 4.9
Std nTPM: 3.7
Median nTPM: 13.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 26.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 22.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 21.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 20.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 20.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 20.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 19.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 30.0
Min nTPM: 25.3
Sample A Female 30.0
Sample B Female 25.3
Sample C Male 26.5
Sample D Male 29.0
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 21.6
Sample A Female 42.4
Sample B Female 26.5
Sample C Male 23.5
Sample D Male 21.6
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 27.1
Min nTPM: 23.1
Sample B Female 27.1
Sample C Male 24.6
Sample D Male 23.1
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.5
Sample A Female 26.6
Sample B Female 21.5
Sample C Male 25.3
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.7
Sample A Male 9.6
Sample B Male 8.9
Sample C Female 9.5
Sample D Female 8.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68158091 Antisense, RP_041116_02_H12, Mouse strain C57BL/6J (56 days, male) 0.3

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