MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:59.8 nTPM
GTEx:11.6 nTPM
FANTOM5:124.8 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:13.6 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.7
2219 Male, age 76, both hemispheres 67.8
1830 Male, age 51, unknown 55.6
2828 Female, age 72, unknown 55.5
1833 Male, age 53, unknown 55.4
2666 Male, age 74, left hemisphere 53.9
1827 Male, age 72, unknown 53.5
2586 Male, age 75, left hemisphere 53.4
1870 Female, age 42, unknown 50.1
2411 Female, age 72, unknown 46.7
2019 Male, age 18, unknown 44.8
Dorsal raphe nucleus
nTPM: 48.1
2750 Male, age 76, both hemispheres 52.4
2047 Male, age 72, unknown 50.9
2016 Female, age 72, unknown 48.6
1828 Male, age 53, unknown 47.1
2298 Female, age 72, unknown 41.5
Inferior colliculus
nTPM: 56.5
2849 Male, age 72, unknown 68.1
1848 Female, age 42, unknown 56.4
1890 Male, age 53, unknown 54.4
2097 Female, age 72, unknown 47.3
Median raphe nucleus
nTPM: 59.8
2220 Male, age 76, midline 59.8
Periaquaductal grey, anterior
nTPM: 53.0
1947 Male, age 18, unknown 55.3
1795 Male, age 51, unknown 52.1
2502 Female, age 75, unknown 51.8
Periaquaductal grey, dorsal
nTPM: 55.6
1840 Male, age 53, unknown 57.7
2850 Male, age 76, both hemispheres 55.9
2464 Female, age 72, unknown 54.5
1831 Male, age 72, unknown 54.4
Periaquaductal grey, lateral
nTPM: 54.6
2140 Male, age 76, both hemispheres 56.1
2053 Male, age 18, unknown 54.6
2272 Male, age 74, both hemispheres 53.0
Pretectal area
nTPM: 53.7
2825 Male, age 18, unknown 60.4
2407 Male, age 75, both hemispheres 59.6
1816 Male, age 51, unknown 56.0
2667 Female, age 75, unknown 55.8
2224 Female, age 72, unknown 54.5
1815 Male, age 53, unknown 52.8
1944 Female, age 72, unknown 51.2
2316 Male, age 76, right hemisphere 50.6
2273 Male, age 74, both hemispheres 50.4
1817 Female, age 42, unknown 49.7
2007 Male, age 72, unknown 49.2
Red nucleus
nTPM: 51.2
2584 Male, age 75, left hemisphere 58.8
2823 Male, age 76, right hemisphere 57.9
2588 Male, age 74, left hemisphere 56.0
2503 Female, age 72, unknown 53.8
1865 Male, age 51, unknown 49.9
1954 Female, age 42, unknown 49.8
1904 Male, age 53, unknown 49.0
2769 Male, age 72, unknown 48.9
2725 Female, age 75, unknown 48.7
2785 Male, age 18, unknown 48.6
2227 Male, age 72, unknown 48.5
1821 Female, age 72, unknown 44.0
Substantia nigra
nTPM: 52.2
2665 Male, age 74, both hemispheres 62.6
2699 Male, age 18, unknown 58.8
2590 Female, age 75, unknown 56.6
2583 Male, age 75, right hemisphere 53.5
1941 Male, age 53, unknown 53.3
2241 Male, age 72, unknown 51.4
1889 Female, age 72, unknown 48.1
1851 Male, age 51, unknown 47.5
1916 Female, age 42, unknown 47.1
2409 Female, age 72, unknown 43.3
Superior colliculus
nTPM: 53.6
2664 Male, age 75, both hemispheres 63.0
1895 Male, age 76, right hemisphere 56.7
1913 Female, age 42, unknown 54.7
1839 Male, age 51, unknown 54.3
2087 Female, age 72, unknown 53.5
1796 Male, age 53, unknown 51.3
1995 Male, age 72, unknown 50.9
2587 Male, age 74, left hemisphere 50.9
2668 Female, age 75, unknown 50.4
2261 Male, age 18, unknown 50.1
Ventral tegmental area
nTPM: 51.0
2223 Female, age 72, unknown 56.8
2218 Male, age 76, both hemispheres 53.8
2021 Male, age 53, unknown 53.1
1942 Male, age 51, unknown 52.2
1915 Female, age 42, unknown 47.1
2410 Female, age 72, unknown 43.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 183

Max nTPM: 18.0
Min nTPM: 6.7
Std nTPM: 1.9
Median nTPM: 11.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 18.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 17.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 17.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 17.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 16.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 15.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 124.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.8
FF:10158-103A5 76 years, female 124.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.9
Samples: 4

Max nTPM: 30.2
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 24.6
Sample C Male 30.0
Sample D Male 30.2
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.2
Sample A Female 29.3
Sample B Female 27.2
Sample C Male 30.7
Sample D Male 29.1
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 29.6
Min nTPM: 26.7
Sample B Female 26.7
Sample C Male 29.6
Sample D Male 28.0
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 21.6
Sample A Female 25.8
Sample B Female 21.6
Sample C Male 29.0
Sample D Male 31.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 14.0
Sample C Female 14.8
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69134352 Antisense, RP_050321_02_H02, Mouse strain C57BL/6J (56 days, male) 3.4

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