MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA Brain:20.8 nTPM
GTEx:18.0 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:48.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
1870 Female, age 42, unknown 23.1
1833 Male, age 53, unknown 22.8
1830 Male, age 51, unknown 21.6
2411 Female, age 72, unknown 20.4
1827 Male, age 72, unknown 20.3
2019 Male, age 18, unknown 20.1
2219 Male, age 76, both hemispheres 19.5
2666 Male, age 74, left hemisphere 19.4
2586 Male, age 75, left hemisphere 18.9
2828 Female, age 72, unknown 17.8
Dorsal raphe nucleus
nTPM: 20.8
2750 Male, age 76, both hemispheres 23.8
2016 Female, age 72, unknown 21.3
2047 Male, age 72, unknown 21.0
2298 Female, age 72, unknown 19.1
1828 Male, age 53, unknown 18.8
Inferior colliculus
nTPM: 19.7
2849 Male, age 72, unknown 20.6
1848 Female, age 42, unknown 20.2
2097 Female, age 72, unknown 19.6
1890 Male, age 53, unknown 18.4
Median raphe nucleus
nTPM: 20.3
2220 Male, age 76, midline 20.3
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 21.1
2502 Female, age 75, unknown 20.0
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 19.5
2464 Female, age 72, unknown 20.6
1840 Male, age 53, unknown 19.8
2850 Male, age 76, both hemispheres 19.3
1831 Male, age 72, unknown 18.4
Periaquaductal grey, lateral
nTPM: 18.3
2053 Male, age 18, unknown 19.9
2272 Male, age 74, both hemispheres 19.1
2140 Male, age 76, both hemispheres 15.8
Pretectal area
nTPM: 20.1
1815 Male, age 53, unknown 21.5
1817 Female, age 42, unknown 21.3
2224 Female, age 72, unknown 21.2
1944 Female, age 72, unknown 20.8
2667 Female, age 75, unknown 20.2
1816 Male, age 51, unknown 19.9
2273 Male, age 74, both hemispheres 19.6
2316 Male, age 76, right hemisphere 19.5
2407 Male, age 75, both hemispheres 19.1
2825 Male, age 18, unknown 19.0
2007 Male, age 72, unknown 18.9
Red nucleus
nTPM: 20.5
1821 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 22.0
2823 Male, age 76, right hemisphere 21.6
1904 Male, age 53, unknown 21.5
1865 Male, age 51, unknown 20.5
2503 Female, age 72, unknown 20.5
2227 Male, age 72, unknown 20.3
2769 Male, age 72, unknown 19.9
2588 Male, age 74, left hemisphere 19.6
2584 Male, age 75, left hemisphere 19.1
2725 Female, age 75, unknown 18.9
2785 Male, age 18, unknown 18.3
Substantia nigra
nTPM: 19.0
1941 Male, age 53, unknown 22.6
2241 Male, age 72, unknown 21.6
1889 Female, age 72, unknown 20.5
2699 Male, age 18, unknown 19.0
1916 Female, age 42, unknown 18.9
1851 Male, age 51, unknown 18.7
2590 Female, age 75, unknown 18.5
2665 Male, age 74, both hemispheres 18.1
2583 Male, age 75, right hemisphere 17.0
2409 Female, age 72, unknown 15.5
Superior colliculus
nTPM: 19.9
1895 Male, age 76, right hemisphere 21.7
2587 Male, age 74, left hemisphere 21.5
2668 Female, age 75, unknown 21.1
1839 Male, age 51, unknown 20.8
1913 Female, age 42, unknown 20.7
2261 Male, age 18, unknown 19.8
1995 Male, age 72, unknown 19.2
2087 Female, age 72, unknown 18.9
2664 Male, age 75, both hemispheres 18.6
1796 Male, age 53, unknown 16.6
Ventral tegmental area
nTPM: 18.6
2223 Female, age 72, unknown 20.5
2218 Male, age 76, both hemispheres 19.4
1942 Male, age 51, unknown 19.1
1915 Female, age 42, unknown 18.8
2021 Male, age 53, unknown 17.0
2410 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.0
Samples: 183

Max nTPM: 27.2
Min nTPM: 11.8
Std nTPM: 2.9
Median nTPM: 18.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 27.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 25.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 25.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 24.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 23.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 23.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 23.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 25.9
Min nTPM: 21.9
Sample A Female 25.9
Sample B Female 24.6
Sample C Male 25.4
Sample D Male 21.9
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 25.7
Sample C Male 31.0
Sample D Male 30.9
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 25.6
Min nTPM: 23.5
Sample B Female 23.8
Sample C Male 25.6
Sample D Male 23.5
Superior colliculi
nTPM: 29.9
Samples: 4

Max nTPM: 33.7
Min nTPM: 27.7
Sample A Female 28.7
Sample B Female 27.7
Sample C Male 33.7
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 51.1
Min nTPM: 44.0
Sample A Male 50.8
Sample B Male 51.1
Sample C Female 46.2
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
686212 Antisense, RP_040916_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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