MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:137.1 nTPM
HPA Brain:109.4 nTPM
GTEx:137.1 nTPM
FANTOM5:225.3 Scaled Tags Per Million
Pig:201.0 nTPM
Mouse:349.6 nTPM
Allen mouse:16.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.7
2411 Female, age 72, unknown 107.4
1870 Female, age 42, unknown 98.3
1827 Male, age 72, unknown 91.7
2219 Male, age 76, both hemispheres 86.9
1833 Male, age 53, unknown 84.5
2019 Male, age 18, unknown 81.0
1830 Male, age 51, unknown 77.3
2828 Female, age 72, unknown 72.7
2666 Male, age 74, left hemisphere 57.9
2586 Male, age 75, left hemisphere 49.3
Dorsal raphe nucleus
nTPM: 97.3
2298 Female, age 72, unknown 123.5
2750 Male, age 76, both hemispheres 102.6
2016 Female, age 72, unknown 88.0
1828 Male, age 53, unknown 87.7
2047 Male, age 72, unknown 84.5
Inferior colliculus
nTPM: 88.5
2097 Female, age 72, unknown 104.9
1890 Male, age 53, unknown 86.8
1848 Female, age 42, unknown 85.7
2849 Male, age 72, unknown 76.6
Median raphe nucleus
nTPM: 109.4
2220 Male, age 76, midline 109.4
Periaquaductal grey, anterior
nTPM: 90.0
1947 Male, age 18, unknown 103.1
2502 Female, age 75, unknown 86.5
1795 Male, age 51, unknown 80.3
Periaquaductal grey, dorsal
nTPM: 87.1
2850 Male, age 76, both hemispheres 105.5
1840 Male, age 53, unknown 83.3
1831 Male, age 72, unknown 81.8
2464 Female, age 72, unknown 78.0
Periaquaductal grey, lateral
nTPM: 92.6
2272 Male, age 74, both hemispheres 104.5
2140 Male, age 76, both hemispheres 87.4
2053 Male, age 18, unknown 85.9
Pretectal area
nTPM: 94.3
2667 Female, age 75, unknown 109.9
2273 Male, age 74, both hemispheres 109.4
1816 Male, age 51, unknown 103.7
2224 Female, age 72, unknown 102.7
1944 Female, age 72, unknown 99.5
1817 Female, age 42, unknown 97.4
2007 Male, age 72, unknown 95.1
1815 Male, age 53, unknown 92.9
2825 Male, age 18, unknown 84.1
2316 Male, age 76, right hemisphere 83.0
2407 Male, age 75, both hemispheres 59.1
Red nucleus
nTPM: 84.6
1821 Female, age 72, unknown 127.3
1954 Female, age 42, unknown 92.5
2725 Female, age 75, unknown 91.0
1904 Male, age 53, unknown 89.6
2823 Male, age 76, right hemisphere 86.8
1865 Male, age 51, unknown 86.1
2503 Female, age 72, unknown 83.6
2769 Male, age 72, unknown 83.6
2227 Male, age 72, unknown 81.0
2785 Male, age 18, unknown 77.2
2588 Male, age 74, left hemisphere 60.4
2584 Male, age 75, left hemisphere 56.3
Substantia nigra
nTPM: 99.8
2241 Male, age 72, unknown 127.7
1916 Female, age 42, unknown 121.9
1941 Male, age 53, unknown 112.6
1889 Female, age 72, unknown 111.7
2409 Female, age 72, unknown 111.5
1851 Male, age 51, unknown 107.3
2699 Male, age 18, unknown 92.7
2590 Female, age 75, unknown 79.9
2665 Male, age 74, both hemispheres 74.7
2583 Male, age 75, right hemisphere 58.4
Superior colliculus
nTPM: 84.0
2587 Male, age 74, left hemisphere 100.5
1895 Male, age 76, right hemisphere 95.3
2261 Male, age 18, unknown 93.8
1913 Female, age 42, unknown 89.5
2087 Female, age 72, unknown 86.0
1796 Male, age 53, unknown 85.8
2668 Female, age 75, unknown 80.7
1839 Male, age 51, unknown 79.8
1995 Male, age 72, unknown 74.8
2664 Male, age 75, both hemispheres 54.0
Ventral tegmental area
nTPM: 94.0
2410 Female, age 72, unknown 108.8
2218 Male, age 76, both hemispheres 108.5
1915 Female, age 42, unknown 99.4
1942 Male, age 51, unknown 86.3
2223 Female, age 72, unknown 83.2
2021 Male, age 53, unknown 77.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 137.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.1
Samples: 183

Max nTPM: 261.4
Min nTPM: 71.1
Std nTPM: 31.7
Median nTPM: 133.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 261.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 255.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 242.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 233.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 212.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 211.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 201.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 195.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 195.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 193.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 225.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 225.3
FF:10158-103A5 76 years, female 225.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 201.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 184.6
Samples: 4

Max nTPM: 237.1
Min nTPM: 140.1
Sample A Female 237.1
Sample B Female 163.1
Sample C Male 198.1
Sample D Male 140.1
Midbrain
nTPM: 199.0
Samples: 4

Max nTPM: 218.6
Min nTPM: 179.8
Sample A Female 218.6
Sample B Female 197.4
Sample C Male 200.0
Sample D Male 179.8
Periaqueductal gray
nTPM: 190.5
Samples: 3

Max nTPM: 205.0
Min nTPM: 179.7
Sample B Female 179.7
Sample C Male 205.0
Sample D Male 186.9
Superior colliculi
nTPM: 201.1
Samples: 4

Max nTPM: 222.4
Min nTPM: 173.6
Sample A Female 222.4
Sample B Female 173.6
Sample C Male 205.2
Sample D Male 203.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 349.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 349.7
Samples: 4

Max nTPM: 358.1
Min nTPM: 337.6
Sample A Male 347.0
Sample B Male 337.6
Sample C Female 358.1
Sample D Female 355.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
357095 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 16.5
77620339 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 15.5
323175 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 14.6
77869857 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 11.4

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