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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:7285.5 nTPM
FANTOM5:4870.0 Scaled Tags Per Million
Pig:4174.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000572Antibody CAB016253Antibody CAB080180
Glial cells LowNot detectedMedium
Neuronal cells Not detectedNot detectedMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7285.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7285.5
Samples: 300

Max nTPM: 19875.7
Min nTPM: 879.2
Std nTPM: 2926.3
Median nTPM: 6783.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 19875.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 16994.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 16443.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 15696.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 15371.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14935.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 14292.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 14285.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 14137.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 13972.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13686.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 13679.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 13320.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 13117.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 13114.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 12767.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 12372.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 12123.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12081.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 11964.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 11951.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 11817.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 11814.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 11664.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 11645.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 11553.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 11476.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 11369.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 11297.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11289.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 11266.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 11168.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 11167.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 11123.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 11001.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 10969.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 10928.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 10844.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 10712.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 10614.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 10522.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 10409.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 10408.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 10344.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 10254.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 10151.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 10104.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 10002.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 9920.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 9781.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 9760.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 9758.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 9741.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 9670.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 9640.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 9613.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 9577.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 9553.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 9527.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 9483.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 9429.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 9427.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 9285.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 9257.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 9145.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 9118.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 9105.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 9050.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 9024.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 8978.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 8883.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 8859.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 8832.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 8813.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 8806.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 8781.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 8755.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8727.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 8718.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8680.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 8609.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 8599.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 8578.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 8525.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 8484.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 8434.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 8424.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 8420.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 8396.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 8386.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8353.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 8275.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 8240.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8239.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 8220.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 8212.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 8198.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 8186.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 8176.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 8055.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 7985.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 7982.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 7959.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 7946.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 7942.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 7915.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 7885.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7883.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 7876.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 7863.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 7830.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 7802.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 7767.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 7711.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 7703.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 7687.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 7652.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 7606.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 7556.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 7554.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 7547.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 7472.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 7471.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 7437.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7414.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 7390.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 7361.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 7322.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 7294.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 7258.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 7208.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7185.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 7159.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 7151.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 7114.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 7092.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7092.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 7069.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 7066.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 7058.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 7057.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 7014.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 6992.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 6945.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6939.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 6913.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 6880.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 6796.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 6792.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 6783.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 6783.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 6776.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6764.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 6761.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 6715.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 6700.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6664.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 6647.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 6628.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 6626.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 6585.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 6583.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6539.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 6523.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 6522.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 6518.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6475.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 6455.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 6447.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 6424.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 6399.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 6339.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 6287.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 6274.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 6265.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 6236.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 6215.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 6207.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 6183.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 6179.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 6160.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 6146.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6139.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6130.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 6104.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 6091.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 6079.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6066.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 6062.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 6054.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 6053.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 6037.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 6023.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6013.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 6000.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 5975.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5958.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5953.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 5946.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 5903.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 5898.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 5874.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 5862.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 5841.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 5779.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 5735.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 5732.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5709.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 5700.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5699.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 5692.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5676.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 5658.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 5657.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 5626.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 5623.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 5596.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 5594.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 5525.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5485.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 5469.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 5439.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5423.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 5408.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 5400.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 5399.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 5356.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 5354.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 5332.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 5278.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 5262.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 5182.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5150.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 5062.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5059.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 5058.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 5056.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 4957.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 4918.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 4889.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 4888.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 4871.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4814.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 4813.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 4802.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 4778.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4773.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 4772.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 4737.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 4717.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 4679.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 4664.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 4643.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 4641.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4603.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 4536.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 4531.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 4524.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4482.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4436.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 4434.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 4386.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4351.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 4316.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4220.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 4184.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 4183.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 4099.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 4073.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 4044.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 4022.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4005.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 3925.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3822.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 3812.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 3732.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 3707.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3680.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 3670.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 3497.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 3471.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 3431.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3420.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3408.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3371.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 3318.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 3156.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 3140.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2976.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2862.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2814.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2702.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2480.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2112.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2035.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1998.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1915.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1547.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1426.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 879.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4870.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4870.0
FF:10164-103B2 76 years, female 4870.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4174.9
Pig sample Sample description nTPM
Caudate
nTPM: 4174.9
Samples: 4

Max nTPM: 5359.6
Min nTPM: 2931.2
Sample A Female 2931.2
Sample B Female 4586.7
Sample C Male 5359.6
Sample D Male 3822.2

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