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  • PDLIM2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:45.3 nTPM
HPA Brain:36.8 nTPM
GTEx:45.3 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:22.6 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.8
Sample id Sample description nTPM
Amygdala
nTPM: 35.4
2695 Female, age 67, right hemisphere 42.8
2814 Male, age 76, right hemisphere 42.7
1987 Female, age 91, left hemisphere 37.9
2517 Female, age 94, left hemisphere 27.9
2514 Male, age 75, right hemisphere 25.5
Basal amygdala
nTPM: 30.2
2609 Male, age 75, right hemisphere 37.5
1955 Male, age 76, both hemispheres 34.3
2243 Female, age 91, right hemisphere 32.4
2827 Female, age 67, right hemisphere 29.0
2110 Male, age 80, left hemisphere 27.4
2685 Female, age 94, left hemisphere 20.6
Central amygdala
nTPM: 36.8
2515 Male, age 75, right hemisphere 49.9
1905 Male, age 76, both hemispheres 41.0
2826 Female, age 94, left hemisphere 40.7
2701 Female, age 91, right hemisphere 28.8
2239 Male, age 80, left hemisphere 23.8
Corticomedial amygdala
nTPM: 27.1
2428 Male, age 75, right hemisphere 35.8
2240 Male, age 76, both hemispheres 27.8
2242 Female, age 91, right hemisphere 27.5
2535 Female, age 67, right hemisphere 25.1
2829 Male, age 80, left hemisphere 24.3
2429 Female, age 94, left hemisphere 22.1
Lateral amygdala
nTPM: 33.3
2830 Female, age 67, right hemisphere 41.2
2516 Male, age 75, right hemisphere 38.8
2534 Female, age 94, left hemisphere 33.6
2255 Female, age 91, right hemisphere 32.5
2256 Male, age 80, left hemisphere 28.3
1883 Male, age 76, both hemispheres 25.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.3
Samples: 181

Max nTPM: 110.5
Min nTPM: 15.6
Std nTPM: 16.8
Median nTPM: 42.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 110.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 106.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 104.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 94.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 86.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 76.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 74.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 73.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 72.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 72.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 72.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 71.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 68.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 67.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 67.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 66.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 64.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 64.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 63.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 63.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 61.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 61.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 60.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 60.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 59.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 58.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 58.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 58.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 57.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 57.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 57.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 56.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 55.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 55.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 55.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 55.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 54.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 53.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 53.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 53.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 53.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 52.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 51.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 50.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 50.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 50.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 50.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 49.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 49.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 49.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 49.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 48.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 47.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 47.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 46.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 46.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 45.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 45.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 44.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 44.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 44.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 43.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 43.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 43.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 43.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 42.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 42.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 42.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 42.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 41.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 41.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 41.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 40.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 40.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 40.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 40.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 40.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 40.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 39.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 39.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 38.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 38.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 38.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 37.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 37.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 37.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 36.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 36.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 36.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 36.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 35.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 35.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 35.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 35.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 35.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 34.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 34.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 34.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 34.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 33.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 33.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 33.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 33.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 33.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 33.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 33.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 33.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 33.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 33.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 33.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 32.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 32.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 32.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 31.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 31.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 31.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 31.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 31.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 30.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 29.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 29.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 28.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 28.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 28.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 28.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 27.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 27.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 27.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 26.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 26.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 25.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 25.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 25.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 25.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 25.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 24.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 24.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 24.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 24.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 22.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 21.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 21.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 19.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 18.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 16.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 15.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.2
FF:10151-102I7 76 years, female 19.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.5
Pig sample Sample description nTPM
Amygdala
nTPM: 3.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.5
Sample A Female 3.9
Sample B Female 4.1
Sample C Male 3.3
Sample D Male 2.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.6
Samples: 4

Max nTPM: 39.2
Min nTPM: 16.0
Sample A Male 16.7
Sample B Male 18.4
Sample C Female 39.2
Sample D Female 16.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
2476 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 2.4
2477 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 0.3

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