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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:84.0 nTPM
HPA Brain:81.9 nTPM
GTEx:84.0 nTPM
FANTOM5:114.6 Scaled Tags Per Million
Pig:54.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 75.6
1981 Female, age 72, midline 77.8
2816 Male, age 47, midline 77.6
2194 Female, age 79, both hemispheres 76.8
2048 Male, age 55, midline 75.4
2565 Male, age 75, midline 70.5
Cervical spinal cord, dorsal horn
nTPM: 78.0
2296 Male, age 66, both hemispheres 89.3
2173 Female, age 72, unknown 89.2
1877 Male, age 55, unknown 81.5
2069 Male, age 47, both hemispheres 73.2
2297 Male, age 75, both hemispheres 68.2
2721 Male, age 90, both hemispheres 66.8
Cervical spinal cord, ventral horn
nTPM: 81.9
2480 Male, age 75, both hemispheres 94.7
2809 Male, age 90, both hemispheres 90.2
2820 Female, age 79, both hemispheres 81.5
2098 Female, age 72, unknown 78.2
2295 Male, age 66, both hemispheres 75.8
2068 Male, age 55, unknown 71.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 84.0
Samples: 204

Max nTPM: 122.6
Min nTPM: 52.9
Std nTPM: 11.1
Median nTPM: 83.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 119.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 116.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 115.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 112.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 112.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 108.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 107.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 104.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 102.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 101.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 101.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 100.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 98.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 98.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 98.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 97.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 95.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 95.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 95.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 95.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 95.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 94.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 94.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 94.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 93.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 93.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 93.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 93.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 92.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 92.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 92.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 91.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 91.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 91.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 91.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 91.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 91.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 90.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 90.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 90.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 90.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 90.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 89.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 89.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 89.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 89.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 89.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 89.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 89.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 89.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 89.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 88.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 88.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 88.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 88.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 88.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 88.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 87.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 87.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 87.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 87.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 87.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 87.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 87.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 86.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 86.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 86.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 86.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 86.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 86.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 85.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 85.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 85.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 85.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 84.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 84.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 84.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 84.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 84.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 84.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 84.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 84.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 83.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 83.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 83.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 83.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 83.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 83.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 83.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 83.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 82.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 82.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 82.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 81.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 81.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 81.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 81.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 81.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 81.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 81.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 80.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 80.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 80.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 80.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 80.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 80.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 80.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 80.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 80.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 79.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 79.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 79.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 79.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 79.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 79.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 79.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 79.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 78.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 78.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 78.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 78.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 78.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 77.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 77.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 77.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 77.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 77.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 77.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 76.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 76.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 76.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 76.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 75.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 75.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 75.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 75.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 75.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 74.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 74.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 74.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 74.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 73.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 73.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 73.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 73.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 72.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 72.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 72.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 71.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 71.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 71.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 71.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 70.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 69.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 69.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 69.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 67.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 67.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 66.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 66.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 65.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 64.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 64.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 64.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 64.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 63.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 62.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 52.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 114.6
FF:10181-103D1 60 years, female 123.8
FF:10159-103A6 76 years, female 105.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 53.6
Samples: 4

Max nTPM: 57.7
Min nTPM: 49.2
Sample A Female 49.2
Sample B Female 57.7
Sample C Male 55.8
Sample D Male 51.5
Ventral spinal cord
nTPM: 54.6
Samples: 4

Max nTPM: 62.6
Min nTPM: 48.0
Sample A Female 54.0
Sample B Female 53.8
Sample C Male 48.0
Sample D Male 62.6

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