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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.9
nTPM
HPA Brain:
15.5
nTPM
GTEx:
31.9
nTPM
FANTOM5:
48.8
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA027288
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 15.5
1855
Male, age 76, left hemisphere
17.6
2529
Female, age 94, left hemisphere
16.8
1898
Male, age 80, left hemisphere
15.9
2621
Female, age 67, right hemisphere
15.9
1911
Female, age 85, right hemisphere
13.9
2148
Female, age 91, left hemisphere
12.7
Dentate gyrus nTPM: 15.2
2530
Female, age 94, left hemisphere
17.6
2010
Male, age 76, both hemispheres
16.2
1927
Female, age 91, both hemispheres
15.3
2531
Female, age 67, both hemispheres
15.2
2246
Female, age 85, both hemispheres
14.8
2528
Male, age 74, both hemispheres
12.1
Entorhinal gyrus nTPM: 15.1
2686
Male, age 75, right hemisphere
18.3
2117
Female, age 91, right hemisphere
16.1
2613
Female, age 94, left hemisphere
15.1
1938
Female, age 85, left hemisphere
14.8
1787
Male, age 76, left hemisphere
13.5
2764
Male, age 80, right hemisphere
12.9
Hippocampus, CA1 nTPM: 15.0
2045
Male, age 76, both hemispheres
18.7
2749
Male, age 80, left hemisphere
15.5
1873
Female, age 85, both hemispheres
14.5
2527
Male, age 74, both hemispheres
14.3
2082
Female, age 91, right hemisphere
12.2
Hippocampus, CA2 nTPM: 14.9
1940
Female, age 85, left hemisphere
16.7
2437
Female, age 94, left hemisphere
15.8
1892
Male, age 76, both hemispheres
15.7
1963
Male, age 80, left hemisphere
15.2
2113
Female, age 91, right hemisphere
14.0
2249
Male, age 74, both hemispheres
12.3
Hippocampus, CA3 nTPM: 14.6
1891
Female, age 85, both hemispheres
17.0
1867
Male, age 76, both hemispheres
16.0
2620
Female, age 94, left hemisphere
15.5
2861
Female, age 67, both hemispheres
14.7
2137
Male, age 80, left hemisphere
13.2
2436
Male, age 74, both hemispheres
11.2
Parahippocampal cortex nTPM: 14.1
2245
Female, age 91, both hemispheres
15.8
2532
Female, age 72, left hemisphere
15.2
1850
Male, age 80, both hemispheres
14.7
2018
Male, age 76, both hemispheres
14.7
2250
Female, age 67, right hemisphere
14.2
1933
Female, age 85, both hemispheres
14.1
2622
Female, age 67, right hemisphere
13.9
2692
Male, age 74, both hemispheres
13.4
1990
Female, age 91, right hemisphere
12.8
2693
Female, age 94, both hemispheres
11.8
Perirhinal gyrus nTPM: 14.0
2848
Male, age 76, right hemisphere
16.2
1794
Male, age 80, right hemisphere
14.7
1841
Female, age 85, right hemisphere
13.9
1847
Female, age 91, left hemisphere
13.1
2521
Female, age 94, right hemisphere
12.2
Subiculum nTPM: 14.6
2042
Male, age 76, both hemispheres
16.7
2438
Female, age 94, left hemisphere
15.9
1901
Male, age 80, both hemispheres
14.8
2729
Female, age 91, right hemisphere
14.0
1977
Female, age 85, both hemispheres
13.3
2619
Male, age 74, both hemispheres
13.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 31.9
Samples: 197
Max nTPM: 63.5
Min nTPM: 19.3
Std nTPM: 6.9
Median nTPM: 30.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
63.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
63.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
61.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
57.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
50.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
48.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
46.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
45.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
44.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
44.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
43.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
43.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
42.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
41.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
41.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
41.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
41.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
41.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
40.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
40.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
39.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
39.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
39.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
39.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
38.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
38.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
37.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
37.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
37.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
37.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
37.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
37.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
37.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
36.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
36.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
36.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
36.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
36.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
35.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
35.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
35.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
35.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
35.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
35.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
35.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
34.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
34.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
34.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
34.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
34.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
34.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
34.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
34.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
34.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
34.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
34.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
34.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
34.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
33.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
33.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
33.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
33.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
33.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
33.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
33.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
33.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
33.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
32.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
32.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
32.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
32.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
32.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
32.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
32.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
32.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
32.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
32.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
32.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
31.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
31.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
31.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
31.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
31.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
31.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
31.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
31.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
31.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
31.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
31.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
31.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
31.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
30.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
30.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
30.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
30.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
30.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
30.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
30.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
30.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
30.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
30.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
30.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
30.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
30.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
30.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
30.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
30.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
30.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
30.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
30.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
29.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
29.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
29.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
29.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
29.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
29.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
29.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
28.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
28.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
28.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
28.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
28.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
28.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
28.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
28.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
28.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
28.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
28.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
28.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
28.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
28.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
28.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
27.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
27.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
27.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
27.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
27.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
27.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
27.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
27.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
27.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
27.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
27.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
27.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
27.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
27.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
26.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
26.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
26.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
26.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
26.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
26.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
26.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
26.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
26.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
26.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
26.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
26.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
26.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
25.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
25.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
25.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
25.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
25.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
25.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
25.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
25.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
25.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
25.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
24.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
24.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
24.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
24.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
24.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
24.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
24.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
24.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
24.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
24.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
24.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
23.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
23.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
23.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
23.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
23.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
22.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
22.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
22.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
19.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.