HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:415.6 nTPM
HPA Brain:625.7 nTPM
GTEx:415.6 nTPM
FANTOM5:316.5 Scaled Tags Per Million
Pig:1320.6 nTPM
Mouse:2291.6 nTPM
Allen mouse:22.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043245Antibody CAB012340
Glial cells Not detectedNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 625.7
Sample id Sample description nTPM
Hippocampus
nTPM: 460.3
2621 Female, age 67, right hemisphere 579.7
1855 Male, age 76, left hemisphere 576.1
2148 Female, age 91, left hemisphere 555.1
1898 Male, age 80, left hemisphere 508.7
1911 Female, age 85, right hemisphere 342.1
2529 Female, age 94, left hemisphere 200.2
Dentate gyrus
nTPM: 456.2
1927 Female, age 91, both hemispheres 781.1
2530 Female, age 94, left hemisphere 594.7
2010 Male, age 76, both hemispheres 527.4
2531 Female, age 67, both hemispheres 344.1
2246 Female, age 85, both hemispheres 249.6
2528 Male, age 74, both hemispheres 240.3
Entorhinal gyrus
nTPM: 128.2
2613 Female, age 94, left hemisphere 199.6
1787 Male, age 76, left hemisphere 158.5
1938 Female, age 85, left hemisphere 143.1
2764 Male, age 80, right hemisphere 129.0
2686 Male, age 75, right hemisphere 77.7
2117 Female, age 91, right hemisphere 61.5
Hippocampus, CA1
nTPM: 625.7
2749 Male, age 80, left hemisphere 1636.2
2045 Male, age 76, both hemispheres 459.5
1873 Female, age 85, both hemispheres 449.7
2527 Male, age 74, both hemispheres 416.3
2082 Female, age 91, right hemisphere 166.6
Hippocampus, CA2
nTPM: 384.1
1963 Male, age 80, left hemisphere 811.0
1892 Male, age 76, both hemispheres 564.1
2249 Male, age 74, both hemispheres 315.4
2437 Female, age 94, left hemisphere 271.6
2113 Female, age 91, right hemisphere 203.9
1940 Female, age 85, left hemisphere 138.5
Hippocampus, CA3
nTPM: 531.8
2137 Male, age 80, left hemisphere 1220.5
2620 Female, age 94, left hemisphere 522.2
2861 Female, age 67, both hemispheres 492.8
1867 Male, age 76, both hemispheres 470.1
2436 Male, age 74, both hemispheres 308.3
1891 Female, age 85, both hemispheres 176.9
Parahippocampal cortex
nTPM: 149.9
2245 Female, age 91, both hemispheres 390.5
2018 Male, age 76, both hemispheres 172.2
1850 Male, age 80, both hemispheres 150.8
2622 Female, age 67, right hemisphere 119.1
2250 Female, age 67, right hemisphere 117.9
1933 Female, age 85, both hemispheres 117.7
2532 Female, age 72, left hemisphere 115.8
1990 Female, age 91, right hemisphere 111.3
2693 Female, age 94, both hemispheres 107.1
2692 Male, age 74, both hemispheres 96.2
Perirhinal gyrus
nTPM: 143.7
1847 Female, age 91, left hemisphere 179.5
1794 Male, age 80, right hemisphere 163.3
1841 Female, age 85, right hemisphere 144.3
2848 Male, age 76, right hemisphere 121.2
2521 Female, age 94, right hemisphere 110.3
Subiculum
nTPM: 234.1
1901 Male, age 80, both hemispheres 510.1
2042 Male, age 76, both hemispheres 415.3
2729 Female, age 91, right hemisphere 172.6
2438 Female, age 94, left hemisphere 122.9
1977 Female, age 85, both hemispheres 94.1
2619 Male, age 74, both hemispheres 89.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 415.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 415.6
Samples: 255

Max nTPM: 1802.3
Min nTPM: 13.0
Std nTPM: 320.0
Median nTPM: 349.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1802.3
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1592.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1350.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1325.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1233.8
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 1192.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1185.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1064.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1061.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1055.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1021.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 316.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 316.5
FF:10169-103B7 60 years, female 580.5
FF:10153-102I9 76 years, female 52.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1320.6
Pig sample Sample description nTPM
Subiculum
nTPM: 102.1
Samples: 4

Max nTPM: 163.8
Min nTPM: 65.0
Sample A Female 163.8
Sample B Female 95.5
Sample C Male 65.0
Sample D Male 83.9
Dorsal hippocampus
nTPM: 1320.7
Samples: 4

Max nTPM: 2215.8
Min nTPM: 484.7
Sample A Female 2215.8
Sample B Female 1448.6
Sample C Male 484.7
Sample D Male 1133.5
Entorhinal cortex
nTPM: 177.9
Samples: 4

Max nTPM: 223.9
Min nTPM: 155.9
Sample A Female 223.9
Sample B Female 168.8
Sample C Male 163.0
Sample D Male 155.9
Ventral hippocampus
nTPM: 895.2
Samples: 4

Max nTPM: 1757.4
Min nTPM: 268.2
Sample A Female 1032.8
Sample B Female 268.2
Sample C Male 522.3
Sample D Male 1757.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 2291.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 538.7
Samples: 4

Max nTPM: 729.4
Min nTPM: 352.0
Sample A Male 572.9
Sample B Male 500.3
Sample C Female 729.4
Sample D Female 352.0
Hippocampal formation
nTPM: 2291.6
Samples: 4

Max nTPM: 3008.8
Min nTPM: 1831.4
Sample A Male 1831.4
Sample B Male 2339.5
Sample C Female 3008.8
Sample D Female 1986.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 22.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.3
72129291 Antisense, RP_051017_03_F07, Mouse strain C57BL/6J (56 days, male) 22.3
75750508 Antisense, RP_060518_04_H10, Mouse strain C57BL/6J (56 days, male) 22.3

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