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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:123.5 nTPM
HPA Brain:84.9 nTPM
GTEx:123.5 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:77.2 nTPM
Mouse:555.4 nTPM
Allen mouse:23.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
Sample id Sample description nTPM
Amygdala
nTPM: 52.2
2517 Female, age 94, left hemisphere 80.6
1987 Female, age 91, left hemisphere 70.0
2695 Female, age 67, right hemisphere 42.1
2514 Male, age 75, right hemisphere 36.8
2814 Male, age 76, right hemisphere 31.6
Basal amygdala
nTPM: 84.9
2685 Female, age 94, left hemisphere 119.6
2827 Female, age 67, right hemisphere 98.6
2110 Male, age 80, left hemisphere 86.4
2243 Female, age 91, right hemisphere 77.5
1955 Male, age 76, both hemispheres 64.7
2609 Male, age 75, right hemisphere 62.8
Central amygdala
nTPM: 67.5
2826 Female, age 94, left hemisphere 96.9
2239 Male, age 80, left hemisphere 90.7
2701 Female, age 91, right hemisphere 69.9
2515 Male, age 75, right hemisphere 45.5
1905 Male, age 76, both hemispheres 34.8
Corticomedial amygdala
nTPM: 77.5
2829 Male, age 80, left hemisphere 126.7
2535 Female, age 67, right hemisphere 110.4
2429 Female, age 94, left hemisphere 76.5
2240 Male, age 76, both hemispheres 62.6
2428 Male, age 75, right hemisphere 51.9
2242 Female, age 91, right hemisphere 36.8
Lateral amygdala
nTPM: 74.7
2256 Male, age 80, left hemisphere 119.4
2534 Female, age 94, left hemisphere 118.0
2255 Female, age 91, right hemisphere 80.5
2830 Female, age 67, right hemisphere 51.3
1883 Male, age 76, both hemispheres 42.6
2516 Male, age 75, right hemisphere 36.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.5
Samples: 181

Max nTPM: 463.6
Min nTPM: 19.0
Std nTPM: 76.2
Median nTPM: 99.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 463.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 396.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 367.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 343.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 338.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 336.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 318.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 262.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 261.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 261.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 256.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 255.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 245.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 244.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 238.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 235.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 230.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 228.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 223.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 212.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 211.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 210.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 197.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 194.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 194.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 192.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 189.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 177.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 173.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 173.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 171.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 171.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 170.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 170.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 166.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 165.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 164.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 164.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 161.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 160.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 159.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 159.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 158.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 155.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 155.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 154.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 153.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 151.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 151.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 150.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 149.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 147.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 146.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 140.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 138.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 138.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 126.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 126.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 122.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 121.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 121.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 120.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 120.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 119.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 119.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 113.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 109.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 104.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 103.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 102.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 99.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 98.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 96.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 96.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 94.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 93.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 93.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 91.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 89.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 88.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 87.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 84.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 84.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 83.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 83.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 81.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 81.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 80.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 80.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 78.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 77.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 77.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 76.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 74.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 71.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 71.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 71.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 69.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 69.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 68.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 67.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 66.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 65.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 64.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 63.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 62.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 56.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 51.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 51.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 49.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 49.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 47.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 46.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 44.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 44.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 38.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 37.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 36.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 33.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 32.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 26.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 21.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 19.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 47.3
FF:10151-102I7 76 years, female 47.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.2
Pig sample Sample description nTPM
Amygdala
nTPM: 77.2
Samples: 4

Max nTPM: 140.8
Min nTPM: 50.0
Sample A Female 140.8
Sample B Female 56.4
Sample C Male 50.0
Sample D Male 61.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

555.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 555.4
Samples: 4

Max nTPM: 805.9
Min nTPM: 417.1
Sample A Male 417.1
Sample B Male 529.8
Sample C Female 805.9
Sample D Female 468.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.2
72129291 Antisense, RP_051017_03_F07, Mouse strain C57BL/6J (56 days, male) 24.8
75750508 Antisense, RP_060518_04_H10, Mouse strain C57BL/6J (56 days, male) 21.5

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