MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:34.4 nTPM
GTEx:11.9 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:37.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
1827 Male, age 72, unknown 30.6
2666 Male, age 74, left hemisphere 29.9
2411 Female, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 25.2
2828 Female, age 72, unknown 24.5
1870 Female, age 42, unknown 23.3
2219 Male, age 76, both hemispheres 21.9
1833 Male, age 53, unknown 21.6
2019 Male, age 18, unknown 19.8
1830 Male, age 51, unknown 19.4
Dorsal raphe nucleus
nTPM: 26.5
2298 Female, age 72, unknown 33.3
2047 Male, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 25.3
1828 Male, age 53, unknown 22.2
2016 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 29.2
1848 Female, age 42, unknown 24.7
2849 Male, age 72, unknown 23.5
1890 Male, age 53, unknown 22.1
Median raphe nucleus
nTPM: 34.4
2220 Male, age 76, midline 34.4
Periaquaductal grey, anterior
nTPM: 32.0
1947 Male, age 18, unknown 37.8
1795 Male, age 51, unknown 31.1
2502 Female, age 75, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 26.4
1840 Male, age 53, unknown 32.6
2850 Male, age 76, both hemispheres 26.7
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 22.7
Periaquaductal grey, lateral
nTPM: 23.1
2140 Male, age 76, both hemispheres 25.7
2053 Male, age 18, unknown 22.6
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 27.8
1816 Male, age 51, unknown 35.9
1944 Female, age 72, unknown 31.5
2224 Female, age 72, unknown 30.0
1817 Female, age 42, unknown 29.9
2007 Male, age 72, unknown 29.7
1815 Male, age 53, unknown 28.3
2667 Female, age 75, unknown 27.1
2273 Male, age 74, both hemispheres 26.0
2825 Male, age 18, unknown 25.4
2407 Male, age 75, both hemispheres 21.4
2316 Male, age 76, right hemisphere 20.8
Red nucleus
nTPM: 17.7
2725 Female, age 75, unknown 22.4
1821 Female, age 72, unknown 20.9
2584 Male, age 75, left hemisphere 20.3
2588 Male, age 74, left hemisphere 18.9
2785 Male, age 18, unknown 18.3
2503 Female, age 72, unknown 17.7
1954 Female, age 42, unknown 17.5
1904 Male, age 53, unknown 16.2
2227 Male, age 72, unknown 16.2
2769 Male, age 72, unknown 15.6
2823 Male, age 76, right hemisphere 14.4
1865 Male, age 51, unknown 13.7
Substantia nigra
nTPM: 32.2
1916 Female, age 42, unknown 50.7
2241 Male, age 72, unknown 41.1
1851 Male, age 51, unknown 37.7
1941 Male, age 53, unknown 33.9
1889 Female, age 72, unknown 30.0
2699 Male, age 18, unknown 27.7
2665 Male, age 74, both hemispheres 27.6
2590 Female, age 75, unknown 26.2
2409 Female, age 72, unknown 24.5
2583 Male, age 75, right hemisphere 22.3
Superior colliculus
nTPM: 24.4
1796 Male, age 53, unknown 30.8
2261 Male, age 18, unknown 29.0
2087 Female, age 72, unknown 28.3
2664 Male, age 75, both hemispheres 26.6
2668 Female, age 75, unknown 26.6
1839 Male, age 51, unknown 24.7
1895 Male, age 76, right hemisphere 23.9
2587 Male, age 74, left hemisphere 22.0
1913 Female, age 42, unknown 16.7
1995 Male, age 72, unknown 16.0
Ventral tegmental area
nTPM: 30.8
1915 Female, age 42, unknown 36.5
2218 Male, age 76, both hemispheres 35.9
2410 Female, age 72, unknown 35.5
1942 Male, age 51, unknown 29.7
2021 Male, age 53, unknown 26.7
2223 Female, age 72, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 183

Max nTPM: 32.4
Min nTPM: 4.6
Std nTPM: 4.7
Median nTPM: 10.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 32.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 28.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 22.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 21.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 21.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 21.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.0
Samples: 4

Max nTPM: 25.1
Min nTPM: 6.5
Sample A Female 22.6
Sample B Female 13.7
Sample C Male 25.1
Sample D Male 6.5
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 12.9
Sample C Male 19.3
Sample D Male 15.6
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 17.4
Min nTPM: 11.8
Sample B Female 11.8
Sample C Male 17.4
Sample D Male 13.1
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.1
Sample A Female 15.3
Sample B Female 11.1
Sample C Male 14.2
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.7
Samples: 4

Max nTPM: 40.0
Min nTPM: 34.8
Sample A Male 34.8
Sample B Male 37.8
Sample C Female 40.0
Sample D Female 38.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69134334 Antisense, RP_050321_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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