MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:19.6 nTPM
GTEx:26.4 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:24.5 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
2586 Male, age 75, left hemisphere 25.8
2828 Female, age 72, unknown 20.8
2019 Male, age 18, unknown 20.1
1827 Male, age 72, unknown 19.2
2219 Male, age 76, both hemispheres 16.9
2666 Male, age 74, left hemisphere 16.5
1870 Female, age 42, unknown 15.8
2411 Female, age 72, unknown 15.6
1833 Male, age 53, unknown 13.5
1830 Male, age 51, unknown 13.4
Dorsal raphe nucleus
nTPM: 16.7
2298 Female, age 72, unknown 19.1
2047 Male, age 72, unknown 17.4
2016 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.1
2750 Male, age 76, both hemispheres 14.1
Inferior colliculus
nTPM: 15.9
1890 Male, age 53, unknown 17.3
2097 Female, age 72, unknown 17.2
1848 Female, age 42, unknown 15.3
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Periaquaductal grey, anterior
nTPM: 17.8
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 17.7
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 14.7
1840 Male, age 53, unknown 16.0
2850 Male, age 76, both hemispheres 15.0
1831 Male, age 72, unknown 14.7
2464 Female, age 72, unknown 13.0
Periaquaductal grey, lateral
nTPM: 15.1
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 14.2
2140 Male, age 76, both hemispheres 14.2
Pretectal area
nTPM: 19.6
1816 Male, age 51, unknown 27.1
2007 Male, age 72, unknown 25.8
1817 Female, age 42, unknown 25.3
1944 Female, age 72, unknown 23.9
2667 Female, age 75, unknown 21.0
1815 Male, age 53, unknown 20.1
2273 Male, age 74, both hemispheres 15.6
2224 Female, age 72, unknown 14.9
2316 Male, age 76, right hemisphere 14.7
2825 Male, age 18, unknown 14.7
2407 Male, age 75, both hemispheres 12.1
Red nucleus
nTPM: 16.1
2725 Female, age 75, unknown 18.5
2785 Male, age 18, unknown 18.2
2503 Female, age 72, unknown 17.3
1821 Female, age 72, unknown 17.2
2584 Male, age 75, left hemisphere 17.1
2588 Male, age 74, left hemisphere 16.4
1904 Male, age 53, unknown 16.3
1954 Female, age 42, unknown 15.6
1865 Male, age 51, unknown 14.6
2769 Male, age 72, unknown 14.6
2823 Male, age 76, right hemisphere 14.0
2227 Male, age 72, unknown 13.9
Substantia nigra
nTPM: 18.4
1916 Female, age 42, unknown 24.6
1889 Female, age 72, unknown 21.5
1851 Male, age 51, unknown 19.8
2665 Male, age 74, both hemispheres 19.0
1941 Male, age 53, unknown 18.4
2409 Female, age 72, unknown 17.6
2241 Male, age 72, unknown 17.1
2699 Male, age 18, unknown 16.3
2583 Male, age 75, right hemisphere 15.4
2590 Female, age 75, unknown 14.6
Superior colliculus
nTPM: 17.0
1796 Male, age 53, unknown 20.4
2261 Male, age 18, unknown 20.4
2087 Female, age 72, unknown 19.1
1895 Male, age 76, right hemisphere 16.8
1995 Male, age 72, unknown 16.5
2664 Male, age 75, both hemispheres 16.5
2668 Female, age 75, unknown 15.9
1839 Male, age 51, unknown 15.3
1913 Female, age 42, unknown 15.0
2587 Male, age 74, left hemisphere 14.6
Ventral tegmental area
nTPM: 16.6
2410 Female, age 72, unknown 20.3
1915 Female, age 42, unknown 18.1
1942 Male, age 51, unknown 16.7
2218 Male, age 76, both hemispheres 16.2
2223 Female, age 72, unknown 14.2
2021 Male, age 53, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 183

Max nTPM: 49.8
Min nTPM: 13.8
Std nTPM: 5.3
Median nTPM: 26.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 43.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 38.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 38.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 37.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 37.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 35.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 34.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 37.7
Min nTPM: 23.5
Sample A Female 37.7
Sample B Female 23.5
Sample C Male 28.3
Sample D Male 25.0
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 40.5
Min nTPM: 21.9
Sample A Female 38.8
Sample B Female 21.9
Sample C Male 40.5
Sample D Male 26.4
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 26.0
Min nTPM: 22.2
Sample B Female 23.9
Sample C Male 26.0
Sample D Male 22.2
Superior colliculi
nTPM: 37.4
Samples: 4

Max nTPM: 47.7
Min nTPM: 27.6
Sample A Female 47.7
Sample B Female 27.6
Sample C Male 42.1
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 25.8
Min nTPM: 23.0
Sample A Male 23.0
Sample B Male 25.8
Sample C Female 25.6
Sample D Female 23.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68798115 Antisense, RP_050215_01_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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