MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:709.0 nTPM
HPA Brain:223.6 nTPM
GTEx:709.0 nTPM
FANTOM5:539.0 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 223.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 203.0
2666 Male, age 74, left hemisphere 249.3
1870 Female, age 42, unknown 229.2
2828 Female, age 72, unknown 205.3
2586 Male, age 75, left hemisphere 202.1
2411 Female, age 72, unknown 198.0
1833 Male, age 53, unknown 196.5
1830 Male, age 51, unknown 193.3
1827 Male, age 72, unknown 191.8
2019 Male, age 18, unknown 182.9
2219 Male, age 76, both hemispheres 181.9
Dorsal raphe nucleus
nTPM: 207.3
2298 Female, age 72, unknown 232.5
2016 Female, age 72, unknown 230.5
1828 Male, age 53, unknown 198.6
2750 Male, age 76, both hemispheres 189.0
2047 Male, age 72, unknown 185.7
Inferior colliculus
nTPM: 208.5
2849 Male, age 72, unknown 229.8
1890 Male, age 53, unknown 208.9
1848 Female, age 42, unknown 201.4
2097 Female, age 72, unknown 194.1
Median raphe nucleus
nTPM: 192.5
2220 Male, age 76, midline 192.5
Periaquaductal grey, anterior
nTPM: 201.5
2502 Female, age 75, unknown 232.4
1947 Male, age 18, unknown 187.8
1795 Male, age 51, unknown 184.5
Periaquaductal grey, dorsal
nTPM: 206.2
1840 Male, age 53, unknown 224.1
2850 Male, age 76, both hemispheres 218.1
1831 Male, age 72, unknown 200.5
2464 Female, age 72, unknown 182.2
Periaquaductal grey, lateral
nTPM: 192.1
2053 Male, age 18, unknown 225.7
2140 Male, age 76, both hemispheres 179.1
2272 Male, age 74, both hemispheres 171.4
Pretectal area
nTPM: 192.1
1815 Male, age 53, unknown 214.4
2224 Female, age 72, unknown 214.1
2825 Male, age 18, unknown 212.4
1817 Female, age 42, unknown 206.4
2316 Male, age 76, right hemisphere 196.4
1816 Male, age 51, unknown 194.9
2007 Male, age 72, unknown 185.5
2407 Male, age 75, both hemispheres 182.0
2273 Male, age 74, both hemispheres 175.3
1944 Female, age 72, unknown 166.9
2667 Female, age 75, unknown 165.0
Red nucleus
nTPM: 223.6
2503 Female, age 72, unknown 272.8
1821 Female, age 72, unknown 258.3
2725 Female, age 75, unknown 251.4
1865 Male, age 51, unknown 232.8
2584 Male, age 75, left hemisphere 226.7
2769 Male, age 72, unknown 219.9
2588 Male, age 74, left hemisphere 218.4
1904 Male, age 53, unknown 212.5
2227 Male, age 72, unknown 208.7
1954 Female, age 42, unknown 200.0
2823 Male, age 76, right hemisphere 195.3
2785 Male, age 18, unknown 186.9
Substantia nigra
nTPM: 216.7
2699 Male, age 18, unknown 256.2
2665 Male, age 74, both hemispheres 253.4
1851 Male, age 51, unknown 245.3
2241 Male, age 72, unknown 235.9
2590 Female, age 75, unknown 215.6
1916 Female, age 42, unknown 203.5
1889 Female, age 72, unknown 200.7
2409 Female, age 72, unknown 194.7
2583 Male, age 75, right hemisphere 186.9
1941 Male, age 53, unknown 175.2
Superior colliculus
nTPM: 202.4
2587 Male, age 74, left hemisphere 268.4
1995 Male, age 72, unknown 220.6
1913 Female, age 42, unknown 220.4
2664 Male, age 75, both hemispheres 211.3
1839 Male, age 51, unknown 200.4
1796 Male, age 53, unknown 198.8
1895 Male, age 76, right hemisphere 183.3
2261 Male, age 18, unknown 179.5
2668 Female, age 75, unknown 176.7
2087 Female, age 72, unknown 164.8
Ventral tegmental area
nTPM: 208.8
2021 Male, age 53, unknown 234.2
1915 Female, age 42, unknown 230.5
2223 Female, age 72, unknown 224.6
2410 Female, age 72, unknown 194.4
1942 Male, age 51, unknown 193.8
2218 Male, age 76, both hemispheres 175.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 709.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 709.0
Samples: 183

Max nTPM: 1435.8
Min nTPM: 252.1
Std nTPM: 213.8
Median nTPM: 689.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1435.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1333.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1318.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1313.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1299.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1164.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1122.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1117.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1110.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1063.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1055.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 539.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 539.0
FF:10158-103A5 76 years, female 539.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.1

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