MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA Brain:37.4 nTPM
GTEx:12.4 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:23.1 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
1870 Female, age 42, unknown 38.7
1830 Male, age 51, unknown 36.6
1833 Male, age 53, unknown 36.5
2411 Female, age 72, unknown 36.3
2666 Male, age 74, left hemisphere 35.7
2019 Male, age 18, unknown 35.2
2219 Male, age 76, both hemispheres 32.9
1827 Male, age 72, unknown 28.8
2828 Female, age 72, unknown 28.4
2586 Male, age 75, left hemisphere 27.8
Dorsal raphe nucleus
nTPM: 28.0
2016 Female, age 72, unknown 32.6
2750 Male, age 76, both hemispheres 31.3
1828 Male, age 53, unknown 28.1
2047 Male, age 72, unknown 23.9
2298 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 30.7
1848 Female, age 42, unknown 32.8
2849 Male, age 72, unknown 31.1
1890 Male, age 53, unknown 30.4
2097 Female, age 72, unknown 28.3
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Periaquaductal grey, anterior
nTPM: 28.6
2502 Female, age 75, unknown 31.7
1947 Male, age 18, unknown 30.0
1795 Male, age 51, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 28.1
2464 Female, age 72, unknown 30.7
1831 Male, age 72, unknown 28.4
1840 Male, age 53, unknown 26.8
2850 Male, age 76, both hemispheres 26.3
Periaquaductal grey, lateral
nTPM: 25.2
2053 Male, age 18, unknown 26.7
2140 Male, age 76, both hemispheres 24.7
2272 Male, age 74, both hemispheres 24.3
Pretectal area
nTPM: 27.3
1815 Male, age 53, unknown 31.8
1817 Female, age 42, unknown 30.4
2316 Male, age 76, right hemisphere 30.2
2007 Male, age 72, unknown 28.7
1944 Female, age 72, unknown 27.3
2224 Female, age 72, unknown 26.5
2825 Male, age 18, unknown 26.5
2407 Male, age 75, both hemispheres 25.3
1816 Male, age 51, unknown 24.6
2667 Female, age 75, unknown 24.5
2273 Male, age 74, both hemispheres 24.3
Red nucleus
nTPM: 37.4
1865 Male, age 51, unknown 43.4
2503 Female, age 72, unknown 41.2
1821 Female, age 72, unknown 41.1
1904 Male, age 53, unknown 39.4
2588 Male, age 74, left hemisphere 39.1
1954 Female, age 42, unknown 38.5
2785 Male, age 18, unknown 37.6
2227 Male, age 72, unknown 37.2
2769 Male, age 72, unknown 37.1
2823 Male, age 76, right hemisphere 34.2
2725 Female, age 75, unknown 32.6
2584 Male, age 75, left hemisphere 27.2
Substantia nigra
nTPM: 28.2
2409 Female, age 72, unknown 35.8
1889 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 30.4
2699 Male, age 18, unknown 29.0
2241 Male, age 72, unknown 27.7
1851 Male, age 51, unknown 27.3
2665 Male, age 74, both hemispheres 25.7
2583 Male, age 75, right hemisphere 25.6
1941 Male, age 53, unknown 25.4
1916 Female, age 42, unknown 23.7
Superior colliculus
nTPM: 31.1
1913 Female, age 42, unknown 38.3
1995 Male, age 72, unknown 38.3
2587 Male, age 74, left hemisphere 34.1
1895 Male, age 76, right hemisphere 33.7
1839 Male, age 51, unknown 33.1
2668 Female, age 75, unknown 32.0
1796 Male, age 53, unknown 27.3
2261 Male, age 18, unknown 25.5
2087 Female, age 72, unknown 24.8
2664 Male, age 75, both hemispheres 23.6
Ventral tegmental area
nTPM: 27.6
2410 Female, age 72, unknown 32.8
2223 Female, age 72, unknown 30.1
1942 Male, age 51, unknown 26.6
2021 Male, age 53, unknown 26.1
1915 Female, age 42, unknown 25.4
2218 Male, age 76, both hemispheres 24.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 183

Max nTPM: 29.4
Min nTPM: 5.9
Std nTPM: 3.8
Median nTPM: 11.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 25.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 21.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 21.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 20.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 19.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 19.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.1
Samples: 4

Max nTPM: 48.6
Min nTPM: 45.7
Sample A Female 48.6
Sample B Female 46.2
Sample C Male 47.7
Sample D Male 45.7
Midbrain
nTPM: 57.8
Samples: 4

Max nTPM: 63.0
Min nTPM: 55.2
Sample A Female 56.5
Sample B Female 55.2
Sample C Male 56.6
Sample D Male 63.0
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 53.6
Min nTPM: 47.9
Sample B Female 53.6
Sample C Male 50.6
Sample D Male 47.9
Superior colliculi
nTPM: 60.5
Samples: 4

Max nTPM: 65.2
Min nTPM: 54.0
Sample A Female 60.2
Sample B Female 54.0
Sample C Male 65.2
Sample D Male 62.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 26.0
Min nTPM: 20.2
Sample A Male 20.6
Sample B Male 25.7
Sample C Female 26.0
Sample D Female 20.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
68498546 Antisense, RP_050113_02_A09, Mouse strain C57BL/6J (56 days, male) 3.9

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