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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:161.5 nTPM
HPA Brain:206.5 nTPM
GTEx:161.5 nTPM
FANTOM5:491.5 Scaled Tags Per Million
Pig:541.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 165.4
2048 Male, age 55, midline 220.3
2194 Female, age 79, both hemispheres 194.1
1981 Female, age 72, midline 157.2
2816 Male, age 47, midline 154.2
2565 Male, age 75, midline 101.0
Cervical spinal cord, dorsal horn
nTPM: 168.6
2173 Female, age 72, unknown 218.6
2296 Male, age 66, both hemispheres 189.6
2069 Male, age 47, both hemispheres 178.4
1877 Male, age 55, unknown 170.6
2297 Male, age 75, both hemispheres 141.3
2721 Male, age 90, both hemispheres 113.3
Cervical spinal cord, ventral horn
nTPM: 206.5
2480 Male, age 75, both hemispheres 246.9
2820 Female, age 79, both hemispheres 226.6
2809 Male, age 90, both hemispheres 223.2
2295 Male, age 66, both hemispheres 202.1
2068 Male, age 55, unknown 188.8
2098 Female, age 72, unknown 151.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 161.5
Samples: 204

Max nTPM: 348.3
Min nTPM: 66.4
Std nTPM: 53.7
Median nTPM: 151.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 348.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 347.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 334.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 299.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 293.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 290.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 284.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 278.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 276.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 273.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 272.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 263.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 259.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 257.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 257.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 240.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 239.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 237.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 236.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 233.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 232.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 232.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 231.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 229.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 227.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 224.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 223.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 218.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 217.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 217.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 217.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 214.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 214.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 213.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 209.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 208.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 207.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 205.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 204.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 202.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 202.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 202.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 201.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 200.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 197.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 196.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 196.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 192.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 191.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 190.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 189.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 189.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 188.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 187.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 186.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 184.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 184.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 182.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 181.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 181.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 181.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 180.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 179.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 179.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 176.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 175.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 173.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 173.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 172.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 171.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 170.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 169.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 169.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 168.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 168.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 168.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 167.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 167.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 166.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 163.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 163.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 162.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 162.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 161.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 158.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 158.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 158.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 157.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 157.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 156.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 156.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 155.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 153.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 152.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 152.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 150.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 150.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 150.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 149.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 148.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 147.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 147.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 147.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 146.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 145.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 145.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 145.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 144.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 142.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 142.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 142.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 141.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 141.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 141.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 141.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 140.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 140.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 138.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 137.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 137.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 136.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 132.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 132.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 132.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 131.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 130.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 130.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 128.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 127.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 127.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 127.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 127.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 126.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 126.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 126.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 126.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 125.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 125.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 124.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 124.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 123.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 122.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 122.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 121.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 121.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 121.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 120.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 116.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 116.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 116.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 116.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 115.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 115.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 114.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 112.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 112.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 111.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 110.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 110.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 109.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 109.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 108.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 107.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 106.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 105.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 104.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 102.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 102.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 101.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 101.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 97.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 94.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 93.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 93.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 93.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 91.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 90.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 90.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 88.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 86.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 85.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 82.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 80.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 77.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 72.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 66.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

491.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 491.5
FF:10159-103A6 76 years, female 500.9
FF:10181-103D1 60 years, female 482.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

541.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 495.9
Samples: 4

Max nTPM: 585.9
Min nTPM: 453.3
Sample A Female 466.3
Sample B Female 585.9
Sample C Male 453.3
Sample D Male 478.1
Ventral spinal cord
nTPM: 541.8
Samples: 4

Max nTPM: 641.8
Min nTPM: 498.6
Sample A Female 501.6
Sample B Female 525.3
Sample C Male 498.6
Sample D Male 641.8

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