MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:49.5 nTPM
GTEx:39.5 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:1.4 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
2586 Male, age 75, left hemisphere 49.1
2828 Female, age 72, unknown 40.4
1833 Male, age 53, unknown 33.5
1870 Female, age 42, unknown 32.6
1830 Male, age 51, unknown 31.6
2666 Male, age 74, left hemisphere 29.7
1827 Male, age 72, unknown 28.9
2019 Male, age 18, unknown 22.9
2411 Female, age 72, unknown 20.6
2219 Male, age 76, both hemispheres 17.1
Dorsal raphe nucleus
nTPM: 38.6
2016 Female, age 72, unknown 52.6
1828 Male, age 53, unknown 42.1
2047 Male, age 72, unknown 40.4
2298 Female, age 72, unknown 29.9
2750 Male, age 76, both hemispheres 27.9
Inferior colliculus
nTPM: 30.2
2849 Male, age 72, unknown 37.7
1848 Female, age 42, unknown 32.2
1890 Male, age 53, unknown 26.8
2097 Female, age 72, unknown 24.0
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Periaquaductal grey, anterior
nTPM: 34.7
1947 Male, age 18, unknown 38.9
2502 Female, age 75, unknown 33.5
1795 Male, age 51, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 42.5
2850 Male, age 76, both hemispheres 65.1
1840 Male, age 53, unknown 42.1
1831 Male, age 72, unknown 32.7
2464 Female, age 72, unknown 30.2
Periaquaductal grey, lateral
nTPM: 49.5
2140 Male, age 76, both hemispheres 72.7
2053 Male, age 18, unknown 44.4
2272 Male, age 74, both hemispheres 31.4
Pretectal area
nTPM: 32.3
2316 Male, age 76, right hemisphere 43.5
2273 Male, age 74, both hemispheres 41.3
2407 Male, age 75, both hemispheres 39.5
2825 Male, age 18, unknown 39.2
2224 Female, age 72, unknown 35.9
2667 Female, age 75, unknown 33.0
1815 Male, age 53, unknown 27.9
1817 Female, age 42, unknown 27.4
1944 Female, age 72, unknown 25.8
1816 Male, age 51, unknown 20.6
2007 Male, age 72, unknown 20.6
Red nucleus
nTPM: 34.5
2769 Male, age 72, unknown 43.2
1865 Male, age 51, unknown 40.2
2227 Male, age 72, unknown 40.2
1821 Female, age 72, unknown 39.9
1954 Female, age 42, unknown 39.8
1904 Male, age 53, unknown 38.9
2503 Female, age 72, unknown 37.7
2725 Female, age 75, unknown 34.3
2823 Male, age 76, right hemisphere 29.7
2588 Male, age 74, left hemisphere 28.1
2584 Male, age 75, left hemisphere 22.2
2785 Male, age 18, unknown 19.8
Substantia nigra
nTPM: 44.9
2699 Male, age 18, unknown 90.5
1916 Female, age 42, unknown 54.2
1851 Male, age 51, unknown 50.2
2409 Female, age 72, unknown 43.2
2583 Male, age 75, right hemisphere 41.5
2590 Female, age 75, unknown 41.3
2665 Male, age 74, both hemispheres 35.8
2241 Male, age 72, unknown 34.7
1941 Male, age 53, unknown 30.0
1889 Female, age 72, unknown 27.6
Superior colliculus
nTPM: 30.2
2664 Male, age 75, both hemispheres 48.0
1995 Male, age 72, unknown 33.0
1839 Male, age 51, unknown 31.7
1796 Male, age 53, unknown 31.1
2587 Male, age 74, left hemisphere 30.1
2668 Female, age 75, unknown 29.1
2087 Female, age 72, unknown 28.5
1913 Female, age 42, unknown 26.2
1895 Male, age 76, right hemisphere 22.3
2261 Male, age 18, unknown 22.0
Ventral tegmental area
nTPM: 36.5
1915 Female, age 42, unknown 44.5
2021 Male, age 53, unknown 39.3
1942 Male, age 51, unknown 36.4
2218 Male, age 76, both hemispheres 35.8
2410 Female, age 72, unknown 32.4
2223 Female, age 72, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 183

Max nTPM: 194.9
Min nTPM: 3.0
Std nTPM: 29.5
Median nTPM: 30.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 194.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 173.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 162.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 125.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 121.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 110.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 106.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 88.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 88.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.7
Samples: 4

Max nTPM: 20.3
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 15.6
Sample C Male 14.7
Sample D Male 20.3
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 5.9
Sample A Female 29.2
Sample B Female 14.0
Sample C Male 6.0
Sample D Male 5.9
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 11.0
Min nTPM: 7.6
Sample B Female 11.0
Sample C Male 10.0
Sample D Male 7.6
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 34.6
Sample C Male 10.7
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.4
Sample C Female 1.7
Sample D Female 1.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70445371 Antisense, RP_050614_03_F06, Mouse strain C57BL/6J (56 days, male) 0.2

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