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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
Neuronal projections:
Not detected
Synapses:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3.7
nTPM
HPA Brain:
47.0
nTPM
GTEx:
3.7
nTPM
FANTOM5:
20.4
Scaled Tags Per Million
Pig:
38.5
nTPM
Mouse:
87.7
nTPM
Allen mouse:
3.4
Expression energy
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA018492
Glial cells
Not detected
Neuronal cells
Medium
Neuronal projections
Not detected
Synapses
Medium
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA018492
Glial cells
Medium
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 18.2
2621
Female, age 67, right hemisphere
26.7
2148
Female, age 91, left hemisphere
25.2
1898
Male, age 80, left hemisphere
20.9
1855
Male, age 76, left hemisphere
15.0
1911
Female, age 85, right hemisphere
11.8
2529
Female, age 94, left hemisphere
9.6
Dentate gyrus nTPM: 25.1
2531
Female, age 67, both hemispheres
46.4
1927
Female, age 91, both hemispheres
31.4
2528
Male, age 74, both hemispheres
25.6
2246
Female, age 85, both hemispheres
21.8
2010
Male, age 76, both hemispheres
14.5
2530
Female, age 94, left hemisphere
11.2
Entorhinal gyrus nTPM: 35.9
2613
Female, age 94, left hemisphere
60.5
1938
Female, age 85, left hemisphere
38.9
2764
Male, age 80, right hemisphere
36.3
1787
Male, age 76, left hemisphere
34.2
2686
Male, age 75, right hemisphere
25.9
2117
Female, age 91, right hemisphere
19.7
Hippocampus, CA1 nTPM: 24.0
2749
Male, age 80, left hemisphere
30.0
2045
Male, age 76, both hemispheres
27.5
2527
Male, age 74, both hemispheres
24.3
2082
Female, age 91, right hemisphere
21.6
1873
Female, age 85, both hemispheres
16.7
Hippocampus, CA2 nTPM: 17.3
2437
Female, age 94, left hemisphere
21.8
1940
Female, age 85, left hemisphere
20.7
1892
Male, age 76, both hemispheres
17.9
2113
Female, age 91, right hemisphere
17.7
1963
Male, age 80, left hemisphere
16.2
2249
Male, age 74, both hemispheres
9.3
Hippocampus, CA3 nTPM: 25.3
2620
Female, age 94, left hemisphere
53.4
2861
Female, age 67, both hemispheres
30.8
1867
Male, age 76, both hemispheres
17.9
2436
Male, age 74, both hemispheres
17.1
1891
Female, age 85, both hemispheres
16.6
2137
Male, age 80, left hemisphere
16.0
Parahippocampal cortex nTPM: 31.7
1990
Female, age 91, right hemisphere
39.7
2532
Female, age 72, left hemisphere
37.9
1933
Female, age 85, both hemispheres
35.4
1850
Male, age 80, both hemispheres
34.9
2250
Female, age 67, right hemisphere
33.2
2693
Female, age 94, both hemispheres
32.5
2622
Female, age 67, right hemisphere
32.4
2245
Female, age 91, both hemispheres
28.8
2018
Male, age 76, both hemispheres
21.5
2692
Male, age 74, both hemispheres
20.7
Perirhinal gyrus nTPM: 47.0
1847
Female, age 91, left hemisphere
68.2
2521
Female, age 94, right hemisphere
50.3
1794
Male, age 80, right hemisphere
42.0
1841
Female, age 85, right hemisphere
41.0
2848
Male, age 76, right hemisphere
33.3
Subiculum nTPM: 18.2
1977
Female, age 85, both hemispheres
31.2
2619
Male, age 74, both hemispheres
20.0
1901
Male, age 80, both hemispheres
16.8
2438
Female, age 94, left hemisphere
16.6
2729
Female, age 91, right hemisphere
15.8
2042
Male, age 76, both hemispheres
8.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 3.7
Samples: 197
Max nTPM: 25.8
Min nTPM: 0.0
Std nTPM: 4.2
Median nTPM: 2.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
25.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
21.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
19.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
17.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
17.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
16.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
14.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
14.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
12.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
11.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
10.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
10.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
10.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
10.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
10.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
9.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
9.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
8.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
8.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
8.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
8.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
8.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
8.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
8.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
7.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
7.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
7.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
7.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
7.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
7.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
7.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
7.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
7.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
7.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
6.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
6.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
6.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
6.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
6.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
6.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
6.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
6.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
5.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
5.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
5.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
5.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
5.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
5.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
5.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
5.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
4.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
4.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
4.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
4.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
4.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
4.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
4.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
4.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
4.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
4.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
4.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
4.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
4.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
3.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
3.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
3.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
3.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
3.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
3.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
3.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
3.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
3.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
3.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
3.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
3.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
3.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
3.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
2.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
2.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
2.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
2.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
2.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
2.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
2.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
2.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
2.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
2.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
2.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
2.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
2.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
2.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
2.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
2.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
2.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
2.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
2.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
2.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
1.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
1.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
1.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
1.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
1.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
1.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
0.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
0.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
0.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
0.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
0.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
0.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
0.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
0.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
0.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
0.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
0.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
0.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
0.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
0.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
0.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
0.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
0.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
0.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
0.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
0.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
0.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
0.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
0.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
0.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
0.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
0.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
0.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
0.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
0.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
0.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
0.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
0.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
0.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
0.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
0.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
0.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
0.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
0.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
0.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
0.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
0.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
0.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
0.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
0.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
0.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
0.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
0.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
0.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
0.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
0.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
0.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
0.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
0.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
0.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
0.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
0.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 87.7
Samples: 4
Max nTPM: 103.0
Min nTPM: 81.2
Sample A
Male
81.2
Sample B
Male
83.1
Sample C
Female
83.4
Sample D
Female
103.0
Hippocampal formation nTPM: 70.9
Samples: 4
Max nTPM: 79.9
Min nTPM: 62.9
Sample A
Male
79.9
Sample B
Male
72.6
Sample C
Female
62.9
Sample D
Female
68.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.