HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:22.0 nTPM
HPA Brain:20.6 nTPM
GTEx:22.0 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:40.0 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039904
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 20.6
Sample id Sample description nTPM
Hippocampus
nTPM: 15.8
1898 Male, age 80, left hemisphere 18.6
2621 Female, age 67, right hemisphere 16.0
1911 Female, age 85, right hemisphere 15.7
1855 Male, age 76, left hemisphere 15.6
2529 Female, age 94, left hemisphere 15.2
2148 Female, age 91, left hemisphere 13.6
Dentate gyrus
nTPM: 14.5
2010 Male, age 76, both hemispheres 17.0
2530 Female, age 94, left hemisphere 16.5
1927 Female, age 91, both hemispheres 16.1
2528 Male, age 74, both hemispheres 13.0
2246 Female, age 85, both hemispheres 12.3
2531 Female, age 67, both hemispheres 12.1
Entorhinal gyrus
nTPM: 16.5
2764 Male, age 80, right hemisphere 18.9
1938 Female, age 85, left hemisphere 18.8
1787 Male, age 76, left hemisphere 17.0
2117 Female, age 91, right hemisphere 16.0
2613 Female, age 94, left hemisphere 15.4
2686 Male, age 75, right hemisphere 13.0
Hippocampus, CA1
nTPM: 20.6
2749 Male, age 80, left hemisphere 38.1
2045 Male, age 76, both hemispheres 20.7
2527 Male, age 74, both hemispheres 16.7
1873 Female, age 85, both hemispheres 14.3
2082 Female, age 91, right hemisphere 13.2
Hippocampus, CA2
nTPM: 17.2
1892 Male, age 76, both hemispheres 20.4
1940 Female, age 85, left hemisphere 17.8
1963 Male, age 80, left hemisphere 17.8
2249 Male, age 74, both hemispheres 16.6
2113 Female, age 91, right hemisphere 16.0
2437 Female, age 94, left hemisphere 14.9
Hippocampus, CA3
nTPM: 19.6
2137 Male, age 80, left hemisphere 30.9
1867 Male, age 76, both hemispheres 27.9
2436 Male, age 74, both hemispheres 17.2
1891 Female, age 85, both hemispheres 15.0
2861 Female, age 67, both hemispheres 14.2
2620 Female, age 94, left hemisphere 12.5
Parahippocampal cortex
nTPM: 15.3
1850 Male, age 80, both hemispheres 18.8
1933 Female, age 85, both hemispheres 18.8
2018 Male, age 76, both hemispheres 17.3
2245 Female, age 91, both hemispheres 16.4
1990 Female, age 91, right hemisphere 16.0
2532 Female, age 72, left hemisphere 15.9
2250 Female, age 67, right hemisphere 15.2
2692 Male, age 74, both hemispheres 12.6
2693 Female, age 94, both hemispheres 11.1
2622 Female, age 67, right hemisphere 10.6
Perirhinal gyrus
nTPM: 16.4
1847 Female, age 91, left hemisphere 20.3
1794 Male, age 80, right hemisphere 16.7
1841 Female, age 85, right hemisphere 16.7
2848 Male, age 76, right hemisphere 14.8
2521 Female, age 94, right hemisphere 13.6
Subiculum
nTPM: 17.6
2042 Male, age 76, both hemispheres 25.5
1901 Male, age 80, both hemispheres 24.1
1977 Female, age 85, both hemispheres 16.7
2619 Male, age 74, both hemispheres 14.0
2438 Female, age 94, left hemisphere 13.1
2729 Female, age 91, right hemisphere 12.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 22.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.0
Samples: 255

Max nTPM: 49.0
Min nTPM: 11.9
Std nTPM: 6.8
Median nTPM: 20.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 49.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 47.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 44.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 44.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 43.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 43.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 42.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 41.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 40.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 39.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 37.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.0
FF:10153-102I9 76 years, female 18.5
FF:10169-103B7 60 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Subiculum
nTPM: 14.0
Samples: 4

Max nTPM: 18.4
Min nTPM: 10.6
Sample A Female 18.4
Sample B Female 12.2
Sample C Male 14.8
Sample D Male 10.6
Dorsal hippocampus
nTPM: 17.2
Samples: 4

Max nTPM: 23.3
Min nTPM: 13.0
Sample A Female 23.3
Sample B Female 16.4
Sample C Male 16.1
Sample D Male 13.0
Entorhinal cortex
nTPM: 14.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.0
Sample A Female 14.7
Sample B Female 16.3
Sample C Male 15.7
Sample D Male 12.0
Ventral hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 10.7
Sample A Female 16.5
Sample B Female 10.7
Sample C Male 19.0
Sample D Male 16.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 40.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 36.2
Sample C Female 36.6
Sample D Female 36.0
Hippocampal formation
nTPM: 40.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 37.2
Sample A Male 37.2
Sample B Male 39.4
Sample C Female 43.2
Sample D Female 40.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
69080044 Antisense, RP_050324_01_F07, Mouse strain C57BL/6J (56 days, male) 5.9

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