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  • TISSUE

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  • TUBA1B
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1071.3 nTPM
HPA Brain:800.3 nTPM
GTEx:1071.3 nTPM
FANTOM5:1438.1 Scaled Tags Per Million
Pig:489.8 nTPM
Mouse:1073.5 nTPM
Allen mouse:32.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

800.3
Sample id Sample description nTPM
Amygdala
nTPM: 745.8
2814 Male, age 76, right hemisphere 989.4
2695 Female, age 67, right hemisphere 748.6
1987 Female, age 91, left hemisphere 738.1
2514 Male, age 75, right hemisphere 633.8
2517 Female, age 94, left hemisphere 619.1
Basal amygdala
nTPM: 642.2
2685 Female, age 94, left hemisphere 729.9
1955 Male, age 76, both hemispheres 698.8
2243 Female, age 91, right hemisphere 693.8
2110 Male, age 80, left hemisphere 595.9
2827 Female, age 67, right hemisphere 576.7
2609 Male, age 75, right hemisphere 558.1
Central amygdala
nTPM: 800.3
1905 Male, age 76, both hemispheres 974.7
2826 Female, age 94, left hemisphere 970.4
2239 Male, age 80, left hemisphere 742.4
2515 Male, age 75, right hemisphere 694.3
2701 Female, age 91, right hemisphere 619.9
Corticomedial amygdala
nTPM: 614.8
2240 Male, age 76, both hemispheres 716.3
2429 Female, age 94, left hemisphere 652.2
2242 Female, age 91, right hemisphere 611.1
2829 Male, age 80, left hemisphere 596.3
2428 Male, age 75, right hemisphere 557.9
2535 Female, age 67, right hemisphere 555.0
Lateral amygdala
nTPM: 750.8
2534 Female, age 94, left hemisphere 1101.5
1883 Male, age 76, both hemispheres 915.1
2830 Female, age 67, right hemisphere 723.6
2256 Male, age 80, left hemisphere 685.0
2516 Male, age 75, right hemisphere 567.7
2255 Female, age 91, right hemisphere 512.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1071.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1071.3
Samples: 181

Max nTPM: 3841.5
Min nTPM: 197.7
Std nTPM: 618.4
Median nTPM: 921.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3841.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3833.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2841.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2414.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 2396.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2215.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2184.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2141.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 2133.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2068.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2065.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2000.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1992.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1952.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1946.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1930.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1899.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1881.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1873.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1871.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1870.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1866.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1866.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1775.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1774.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1717.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1702.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1684.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1684.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1669.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1665.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1652.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1622.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1618.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1617.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1603.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1596.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1587.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1577.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1542.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1535.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1527.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1526.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1526.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1515.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1507.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1493.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1491.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1472.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1458.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1414.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1404.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1369.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1323.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1314.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1303.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1290.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1266.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1256.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1217.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1185.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1181.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1181.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1163.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1157.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1156.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1137.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1128.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1128.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1120.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1109.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1107.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1100.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1098.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1095.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1080.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1050.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1048.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1045.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1044.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1031.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1031.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1023.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1022.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1013.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1000.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 992.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 988.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 924.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 923.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 921.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 921.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 896.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 893.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 878.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 860.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 853.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 828.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 823.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 822.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 811.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 809.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 799.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 795.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 791.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 789.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 789.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 786.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 779.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 778.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 778.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 777.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 774.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 760.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 756.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 755.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 754.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 754.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 744.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 720.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 705.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 682.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 669.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 667.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 660.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 651.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 643.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 642.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 626.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 615.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 612.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 612.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 600.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 586.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 584.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 572.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 568.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 566.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 563.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 561.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 554.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 551.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 548.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 542.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 541.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 532.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 527.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 521.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 483.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 483.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 473.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 470.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 468.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 467.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 466.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 462.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 462.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 458.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 446.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 436.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 432.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 432.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 427.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 424.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 419.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 416.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 414.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 410.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 409.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 398.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 394.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 380.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 368.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 357.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 349.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 336.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 326.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 296.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 276.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 273.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 197.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1438.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1438.1
FF:10151-102I7 76 years, female 1438.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.8
Pig sample Sample description nTPM
Amygdala
nTPM: 489.8
Samples: 4

Max nTPM: 571.2
Min nTPM: 351.1
Sample A Female 571.2
Sample B Female 488.0
Sample C Male 548.9
Sample D Male 351.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1073.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1073.5
Samples: 4

Max nTPM: 1179.4
Min nTPM: 996.8
Sample A Male 1179.4
Sample B Male 1076.9
Sample C Female 996.8
Sample D Female 1040.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

32.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.1
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 32.1

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