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  • AMD1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:59.3 nTPM
HPA Brain:64.7 nTPM
GTEx:59.3 nTPM
FANTOM5:259.2 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 45.2
1981 Female, age 72, midline 55.7
2048 Male, age 55, midline 44.6
2816 Male, age 47, midline 43.0
2194 Female, age 79, both hemispheres 42.1
2565 Male, age 75, midline 40.6
Cervical spinal cord, dorsal horn
nTPM: 64.7
2296 Male, age 66, both hemispheres 97.4
2069 Male, age 47, both hemispheres 73.9
2173 Female, age 72, unknown 67.7
1877 Male, age 55, unknown 59.9
2297 Male, age 75, both hemispheres 51.7
2721 Male, age 90, both hemispheres 37.4
Cervical spinal cord, ventral horn
nTPM: 45.9
2098 Female, age 72, unknown 59.5
2480 Male, age 75, both hemispheres 53.8
2068 Male, age 55, unknown 48.8
2809 Male, age 90, both hemispheres 41.3
2295 Male, age 66, both hemispheres 36.7
2820 Female, age 79, both hemispheres 35.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 59.3
Samples: 204

Max nTPM: 145.9
Min nTPM: 29.0
Std nTPM: 17.8
Median nTPM: 58.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 145.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 122.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 111.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 111.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 109.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 102.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 101.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 98.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 98.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 93.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 90.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 90.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 85.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 85.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 85.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 83.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 82.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 81.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 81.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 80.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 80.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 79.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 78.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 78.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 76.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 74.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 74.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 73.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 73.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 70.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 70.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 69.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 69.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 69.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 69.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 69.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 68.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 68.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 68.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 68.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 68.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 68.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 67.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 67.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 67.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 67.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 66.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 66.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 65.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 65.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 65.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 65.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 64.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 64.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 63.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 63.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 63.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 62.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 62.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 62.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 62.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 61.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 61.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 61.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 61.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 61.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 60.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 60.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 60.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 59.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 59.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 59.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 59.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 59.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 59.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 58.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 58.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 58.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 58.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 58.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 58.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 58.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 58.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 58.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 58.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 58.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 57.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 57.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 56.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 56.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 55.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 55.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 55.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 55.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 55.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 55.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 55.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 55.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 54.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 54.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 54.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 53.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 53.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 53.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 53.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 52.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 52.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 52.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 52.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 52.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 51.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 51.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 50.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 50.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 50.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 50.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 50.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 50.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 49.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 49.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 49.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 49.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 48.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 48.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 48.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 47.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 47.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 47.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 47.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 46.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 46.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 46.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 46.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 46.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 45.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 45.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 45.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 44.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 44.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 44.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 44.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 44.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 43.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 43.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 43.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 43.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 43.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 42.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 42.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 42.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 41.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 41.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 40.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 40.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 39.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 39.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 38.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 38.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 38.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 38.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 38.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 38.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 38.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 38.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 38.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 38.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 37.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 37.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 37.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 35.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 34.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 33.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 33.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 33.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 32.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 31.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 31.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 29.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 259.2
FF:10159-103A6 76 years, female 302.8
FF:10181-103D1 60 years, female 215.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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