MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA Brain:39.8 nTPM
GTEx:18.8 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:36.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
1827 Male, age 72, unknown 36.3
2219 Male, age 76, both hemispheres 32.6
2828 Female, age 72, unknown 32.0
2019 Male, age 18, unknown 24.3
1833 Male, age 53, unknown 22.4
1870 Female, age 42, unknown 22.1
2586 Male, age 75, left hemisphere 21.9
2666 Male, age 74, left hemisphere 17.9
1830 Male, age 51, unknown 15.8
2411 Female, age 72, unknown 15.5
Dorsal raphe nucleus
nTPM: 18.8
2047 Male, age 72, unknown 22.6
1828 Male, age 53, unknown 20.3
2298 Female, age 72, unknown 18.9
2016 Female, age 72, unknown 16.8
2750 Male, age 76, both hemispheres 15.2
Inferior colliculus
nTPM: 34.0
2097 Female, age 72, unknown 39.8
2849 Male, age 72, unknown 34.3
1890 Male, age 53, unknown 31.9
1848 Female, age 42, unknown 30.1
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Periaquaductal grey, anterior
nTPM: 21.8
2502 Female, age 75, unknown 32.0
1795 Male, age 51, unknown 25.4
1947 Male, age 18, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 21.1
1840 Male, age 53, unknown 25.6
2464 Female, age 72, unknown 21.4
2850 Male, age 76, both hemispheres 21.1
1831 Male, age 72, unknown 16.4
Periaquaductal grey, lateral
nTPM: 17.5
2140 Male, age 76, both hemispheres 20.3
2053 Male, age 18, unknown 18.4
2272 Male, age 74, both hemispheres 13.8
Pretectal area
nTPM: 28.7
1817 Female, age 42, unknown 45.1
2007 Male, age 72, unknown 44.4
1816 Male, age 51, unknown 40.9
1815 Male, age 53, unknown 38.5
1944 Female, age 72, unknown 26.7
2667 Female, age 75, unknown 25.2
2825 Male, age 18, unknown 23.7
2224 Female, age 72, unknown 21.0
2407 Male, age 75, both hemispheres 18.5
2316 Male, age 76, right hemisphere 16.5
2273 Male, age 74, both hemispheres 15.1
Red nucleus
nTPM: 16.8
2785 Male, age 18, unknown 27.9
1954 Female, age 42, unknown 18.0
2823 Male, age 76, right hemisphere 17.3
2584 Male, age 75, left hemisphere 17.2
2588 Male, age 74, left hemisphere 16.5
2725 Female, age 75, unknown 16.3
1904 Male, age 53, unknown 16.2
1821 Female, age 72, unknown 16.1
2503 Female, age 72, unknown 15.5
2227 Male, age 72, unknown 15.1
2769 Male, age 72, unknown 15.1
1865 Male, age 51, unknown 10.6
Substantia nigra
nTPM: 34.3
1916 Female, age 42, unknown 61.1
2665 Male, age 74, both hemispheres 49.8
2241 Male, age 72, unknown 39.8
1889 Female, age 72, unknown 39.2
1851 Male, age 51, unknown 38.8
2699 Male, age 18, unknown 33.4
2409 Female, age 72, unknown 28.6
2583 Male, age 75, right hemisphere 18.4
2590 Female, age 75, unknown 18.3
1941 Male, age 53, unknown 15.2
Superior colliculus
nTPM: 23.5
1796 Male, age 53, unknown 34.5
2087 Female, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 31.3
2261 Male, age 18, unknown 27.6
2664 Male, age 75, both hemispheres 24.5
2668 Female, age 75, unknown 23.8
2587 Male, age 74, left hemisphere 19.3
1839 Male, age 51, unknown 16.8
1913 Female, age 42, unknown 16.0
1995 Male, age 72, unknown 7.7
Ventral tegmental area
nTPM: 29.1
2218 Male, age 76, both hemispheres 40.2
1915 Female, age 42, unknown 37.4
2410 Female, age 72, unknown 32.2
1942 Male, age 51, unknown 31.1
2021 Male, age 53, unknown 20.5
2223 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 183

Max nTPM: 56.9
Min nTPM: 1.7
Std nTPM: 13.2
Median nTPM: 15.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 56.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 55.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 52.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 46.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 46.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 46.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 44.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 30.1
Min nTPM: 3.2
Sample A Female 22.2
Sample B Female 11.7
Sample C Male 30.1
Sample D Male 3.2
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 22.4
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 10.2
Sample C Male 5.5
Sample D Male 22.4
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 16.3
Min nTPM: 7.6
Sample B Female 7.8
Sample C Male 16.3
Sample D Male 7.6
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 1.9
Sample A Female 18.3
Sample B Female 1.9
Sample C Male 3.1
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 38.6
Min nTPM: 34.0
Sample A Male 34.8
Sample B Male 34.0
Sample C Female 37.9
Sample D Female 38.6

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