MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:35.0 nTPM
GTEx:31.3 nTPM
FANTOM5:123.3 Scaled Tags Per Million
Pig:68.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
1870 Female, age 42, unknown 31.3
2411 Female, age 72, unknown 29.3
1833 Male, age 53, unknown 27.7
2219 Male, age 76, both hemispheres 27.2
1830 Male, age 51, unknown 26.7
1827 Male, age 72, unknown 25.3
2019 Male, age 18, unknown 23.6
2666 Male, age 74, left hemisphere 22.8
2586 Male, age 75, left hemisphere 20.4
2828 Female, age 72, unknown 19.2
Dorsal raphe nucleus
nTPM: 26.7
2750 Male, age 76, both hemispheres 30.4
2047 Male, age 72, unknown 26.7
2016 Female, age 72, unknown 26.0
1828 Male, age 53, unknown 25.4
2298 Female, age 72, unknown 25.3
Inferior colliculus
nTPM: 27.2
2097 Female, age 72, unknown 32.1
1848 Female, age 42, unknown 25.9
1890 Male, age 53, unknown 25.5
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Periaquaductal grey, anterior
nTPM: 30.0
2502 Female, age 75, unknown 34.2
1947 Male, age 18, unknown 33.7
1795 Male, age 51, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 27.2
2850 Male, age 76, both hemispheres 30.9
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.8
1840 Male, age 53, unknown 25.8
Periaquaductal grey, lateral
nTPM: 25.6
2272 Male, age 74, both hemispheres 29.0
2053 Male, age 18, unknown 26.5
2140 Male, age 76, both hemispheres 21.4
Pretectal area
nTPM: 27.4
1944 Female, age 72, unknown 31.2
1815 Male, age 53, unknown 30.4
2224 Female, age 72, unknown 30.4
2273 Male, age 74, both hemispheres 29.1
1816 Male, age 51, unknown 28.7
1817 Female, age 42, unknown 28.3
2667 Female, age 75, unknown 27.7
2007 Male, age 72, unknown 25.6
2316 Male, age 76, right hemisphere 24.4
2825 Male, age 18, unknown 24.4
2407 Male, age 75, both hemispheres 21.2
Red nucleus
nTPM: 23.0
1821 Female, age 72, unknown 29.2
1954 Female, age 42, unknown 26.1
2823 Male, age 76, right hemisphere 25.2
1904 Male, age 53, unknown 24.5
2503 Female, age 72, unknown 24.0
1865 Male, age 51, unknown 23.6
2584 Male, age 75, left hemisphere 21.8
2227 Male, age 72, unknown 21.7
2725 Female, age 75, unknown 21.7
2785 Male, age 18, unknown 21.5
2769 Male, age 72, unknown 21.4
2588 Male, age 74, left hemisphere 14.8
Substantia nigra
nTPM: 27.6
2241 Male, age 72, unknown 38.0
1941 Male, age 53, unknown 30.6
1889 Female, age 72, unknown 30.0
1851 Male, age 51, unknown 29.4
1916 Female, age 42, unknown 29.1
2699 Male, age 18, unknown 26.8
2409 Female, age 72, unknown 26.4
2590 Female, age 75, unknown 22.7
2665 Male, age 74, both hemispheres 22.5
2583 Male, age 75, right hemisphere 20.6
Superior colliculus
nTPM: 25.8
1913 Female, age 42, unknown 29.0
1895 Male, age 76, right hemisphere 27.6
2261 Male, age 18, unknown 27.5
2087 Female, age 72, unknown 27.3
2668 Female, age 75, unknown 27.3
1839 Male, age 51, unknown 26.4
1995 Male, age 72, unknown 24.3
1796 Male, age 53, unknown 23.3
2587 Male, age 74, left hemisphere 23.2
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 28.5
2223 Female, age 72, unknown 33.2
2218 Male, age 76, both hemispheres 30.2
1942 Male, age 51, unknown 29.1
2410 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 26.6
2021 Male, age 53, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 183

Max nTPM: 53.5
Min nTPM: 15.1
Std nTPM: 6.2
Median nTPM: 31.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 53.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 47.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 43.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 42.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 41.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 41.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 41.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.3
FF:10158-103A5 76 years, female 123.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.8
Samples: 4

Max nTPM: 86.0
Min nTPM: 50.2
Sample A Female 86.0
Sample B Female 55.5
Sample C Male 59.3
Sample D Male 50.2
Midbrain
nTPM: 67.5
Samples: 4

Max nTPM: 85.1
Min nTPM: 58.9
Sample A Female 85.1
Sample B Female 59.6
Sample C Male 66.4
Sample D Male 58.9
Periaqueductal gray
nTPM: 56.2
Samples: 3

Max nTPM: 58.8
Min nTPM: 54.5
Sample B Female 54.5
Sample C Male 55.2
Sample D Male 58.8
Superior colliculi
nTPM: 68.1
Samples: 4

Max nTPM: 86.8
Min nTPM: 47.4
Sample A Female 86.8
Sample B Female 47.4
Sample C Male 72.7
Sample D Male 65.3

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