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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:19.5 nTPM
GTEx:19.5 nTPM
FANTOM5:55.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035059Antibody HPA035060
Squamous epithelial cells MediumMedium




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 19.5
Samples: 170

Max nTPM: 35.3
Min nTPM: 8.9
Std nTPM: 4.6
Median nTPM: 18.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 35.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 34.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 32.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 29.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 29.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 29.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 28.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 28.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 27.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 26.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 26.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 26.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 26.7
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 26.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 26.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 26.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 26.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 25.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 25.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 25.3
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 25.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 25.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 24.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 24.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 24.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 24.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 24.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 24.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 24.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 24.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 24.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 23.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 23.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 23.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 23.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 23.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 23.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 23.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 23.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 23.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 22.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 22.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 22.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 22.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 21.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 21.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 21.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 21.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 21.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 21.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 21.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 21.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 21.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 21.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 21.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 20.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 20.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 20.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 20.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 20.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 20.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 20.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 20.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 20.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 20.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 20.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 20.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 19.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 19.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 19.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 19.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 19.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 19.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 19.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 19.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 19.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 19.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 19.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 19.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 19.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 19.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 18.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 18.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 18.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 18.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 18.6
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 18.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 18.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 18.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 18.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 18.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 18.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 18.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 18.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 18.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 18.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 18.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 17.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 17.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 17.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 17.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 17.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 17.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 17.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 17.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 17.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 17.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 17.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 17.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 17.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 17.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 17.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 17.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 16.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 16.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 16.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 16.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 16.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 16.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 16.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 16.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 16.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 16.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 16.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 16.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 16.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 16.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 16.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 16.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 16.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 16.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 16.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 16.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 16.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 15.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 15.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 15.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 15.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 15.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 15.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 15.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 15.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 15.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 15.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 15.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 14.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 14.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 14.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 14.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 14.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 14.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 14.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 14.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 14.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 14.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 13.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 13.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 13.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 13.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 13.7
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 13.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 13.6
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 13.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 12.2
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 12.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 11.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 11.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 11.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 11.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 8.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 55.3
FF:10204-103F6 68 years, female 55.3

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