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ATP8A1
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  • ATP8A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:9.7 nTPM
HPA Brain:103.1 nTPM
GTEx:9.7 nTPM
FANTOM5:203.1 Scaled Tags Per Million
Pig:132.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.6
1981 Female, age 72, midline 75.4
2816 Male, age 47, midline 72.2
2194 Female, age 79, both hemispheres 69.0
2048 Male, age 55, midline 64.8
2565 Male, age 75, midline 51.7
Cervical spinal cord, dorsal horn
nTPM: 103.1
2296 Male, age 66, both hemispheres 164.4
2173 Female, age 72, unknown 108.4
2069 Male, age 47, both hemispheres 105.6
1877 Male, age 55, unknown 101.9
2297 Male, age 75, both hemispheres 83.5
2721 Male, age 90, both hemispheres 54.9
Cervical spinal cord, ventral horn
nTPM: 69.0
2068 Male, age 55, unknown 76.2
2820 Female, age 79, both hemispheres 75.3
2480 Male, age 75, both hemispheres 73.9
2098 Female, age 72, unknown 70.1
2809 Male, age 90, both hemispheres 62.2
2295 Male, age 66, both hemispheres 56.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9.7
Samples: 204

Max nTPM: 44.5
Min nTPM: 0.2
Std nTPM: 6.8
Median nTPM: 8.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 44.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 37.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 29.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 29.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 28.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 27.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 26.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 25.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 24.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 22.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 22.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 21.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 21.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 21.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 20.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 20.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 19.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 19.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 18.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 18.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 18.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 17.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 17.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 16.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 16.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 16.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 16.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 16.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 16.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 15.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 15.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 15.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 15.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 15.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 15.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 14.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 14.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 14.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 14.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 14.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 13.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 13.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 13.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 13.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 13.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 13.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 12.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 12.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 12.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 12.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 12.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 12.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 12.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 12.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 12.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 12.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 12.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 11.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 11.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 11.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 11.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 11.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 11.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 11.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 11.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 11.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 11.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 11.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 11.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 11.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 11.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 11.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 10.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 10.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 10.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 10.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 10.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 10.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 10.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 10.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 10.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 10.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 9.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 9.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 9.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 9.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 9.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 9.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 9.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 9.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 9.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 8.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 8.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 8.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 8.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 8.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 8.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 8.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 8.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 8.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 8.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 8.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 8.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 8.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 8.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 8.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 8.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 8.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 8.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 7.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 7.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 7.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 7.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 7.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 7.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 7.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 7.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 7.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 6.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 6.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 6.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 6.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 6.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 6.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 6.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 6.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 5.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 5.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 5.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 5.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 5.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 5.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 5.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 4.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 4.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 4.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 4.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 4.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 4.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 4.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 4.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 3.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 3.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 3.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 3.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 3.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 2.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 2.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 2.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 2.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 0.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 0.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

203.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 203.1
FF:10181-103D1 60 years, female 264.0
FF:10159-103A6 76 years, female 142.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 128.9
Samples: 4

Max nTPM: 154.8
Min nTPM: 81.9
Sample A Female 154.8
Sample B Female 139.9
Sample C Male 81.9
Sample D Male 138.8
Ventral spinal cord
nTPM: 132.4
Samples: 4

Max nTPM: 156.0
Min nTPM: 91.3
Sample A Female 140.4
Sample B Female 141.8
Sample C Male 91.3
Sample D Male 156.0

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