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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.0
nTPM
HPA Brain:
25.9
nTPM
GTEx:
31.0
nTPM
FANTOM5:
28.6
Scaled Tags Per Million
Pig:
35.2
nTPM
Mouse:
23.5
nTPM
Allen mouse:
0.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
25.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 23.0
2666
Male, age 74, left hemisphere
25.8
1833
Male, age 53, unknown
24.5
1827
Male, age 72, unknown
24.0
1870
Female, age 42, unknown
24.0
1830
Male, age 51, unknown
23.9
2411
Female, age 72, unknown
23.9
2019
Male, age 18, unknown
23.0
2219
Male, age 76, both hemispheres
22.0
2828
Female, age 72, unknown
21.4
2586
Male, age 75, left hemisphere
18.0
Dorsal raphe nucleus nTPM: 23.1
2016
Female, age 72, unknown
25.4
2750
Male, age 76, both hemispheres
24.2
1828
Male, age 53, unknown
22.6
2298
Female, age 72, unknown
22.4
2047
Male, age 72, unknown
20.6
Inferior colliculus nTPM: 21.1
1890
Male, age 53, unknown
22.8
1848
Female, age 42, unknown
22.1
2849
Male, age 72, unknown
19.8
2097
Female, age 72, unknown
19.5
Median raphe nucleus nTPM: 23.9
2220
Male, age 76, midline
23.9
Periaquaductal grey, anterior nTPM: 22.8
1947
Male, age 18, unknown
24.6
2502
Female, age 75, unknown
22.7
1795
Male, age 51, unknown
21.0
Periaquaductal grey, dorsal nTPM: 21.9
1831
Male, age 72, unknown
23.2
1840
Male, age 53, unknown
22.0
2850
Male, age 76, both hemispheres
21.7
2464
Female, age 72, unknown
21.0
Periaquaductal grey, lateral nTPM: 23.0
2053
Male, age 18, unknown
25.1
2140
Male, age 76, both hemispheres
22.1
2272
Male, age 74, both hemispheres
21.8
Pretectal area nTPM: 23.2
2273
Male, age 74, both hemispheres
25.7
2407
Male, age 75, both hemispheres
24.7
1816
Male, age 51, unknown
23.8
1815
Male, age 53, unknown
23.7
2316
Male, age 76, right hemisphere
23.7
2224
Female, age 72, unknown
23.2
2825
Male, age 18, unknown
23.1
1817
Female, age 42, unknown
22.4
2667
Female, age 75, unknown
22.3
2007
Male, age 72, unknown
21.6
1944
Female, age 72, unknown
21.2
Red nucleus nTPM: 25.9
1821
Female, age 72, unknown
29.5
2503
Female, age 72, unknown
29.4
2725
Female, age 75, unknown
28.5
2588
Male, age 74, left hemisphere
27.0
1954
Female, age 42, unknown
26.1
2823
Male, age 76, right hemisphere
26.1
1865
Male, age 51, unknown
25.7
2769
Male, age 72, unknown
25.7
1904
Male, age 53, unknown
25.3
2227
Male, age 72, unknown
24.2
2584
Male, age 75, left hemisphere
22.4
2785
Male, age 18, unknown
21.1
Substantia nigra nTPM: 24.7
2409
Female, age 72, unknown
27.7
2241
Male, age 72, unknown
26.6
2699
Male, age 18, unknown
26.6
1851
Male, age 51, unknown
25.3
1916
Female, age 42, unknown
24.5
2590
Female, age 75, unknown
24.5
2665
Male, age 74, both hemispheres
24.5
1889
Female, age 72, unknown
24.2
1941
Male, age 53, unknown
22.5
2583
Male, age 75, right hemisphere
20.8
Superior colliculus nTPM: 23.0
1913
Female, age 42, unknown
26.8
1995
Male, age 72, unknown
25.9
2587
Male, age 74, left hemisphere
25.4
1895
Male, age 76, right hemisphere
24.7
1839
Male, age 51, unknown
22.7
2261
Male, age 18, unknown
21.9
1796
Male, age 53, unknown
21.6
2668
Female, age 75, unknown
21.6
2087
Female, age 72, unknown
19.8
2664
Male, age 75, both hemispheres
19.3
Ventral tegmental area nTPM: 24.1
2410
Female, age 72, unknown
25.9
2021
Male, age 53, unknown
24.4
1942
Male, age 51, unknown
23.9
2223
Female, age 72, unknown
23.7
2218
Male, age 76, both hemispheres
23.3
1915
Female, age 42, unknown
23.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
31.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.0
Samples: 139
Max nTPM: 55.9
Min nTPM: 17.5
Std nTPM: 7.4
Median nTPM: 29.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
55.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
55.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
48.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
47.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
47.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
47.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
45.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
45.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
44.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
44.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
44.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
43.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
43.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
42.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
42.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
41.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
41.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
41.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
41.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
40.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
39.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
39.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
39.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
38.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
38.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
37.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
37.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
36.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
35.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
35.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
35.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
34.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
34.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
34.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
34.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
34.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
34.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
33.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
32.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
32.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
32.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
32.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
32.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
32.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
32.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
31.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
31.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
31.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
31.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
30.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
30.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
30.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
29.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
29.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
29.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
29.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
29.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
29.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
29.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
29.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
29.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
29.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
29.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
29.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
29.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
29.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
29.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
29.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
28.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
28.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
28.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
28.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
28.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
28.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
28.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
28.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
28.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
28.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
28.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
28.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
28.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
28.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
27.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
27.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
27.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
27.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
27.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
27.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
27.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
27.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
27.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
26.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
26.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
26.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
26.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
26.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
26.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
26.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
25.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
25.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
25.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
25.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
25.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
25.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
24.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
24.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
24.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
23.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
23.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
23.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
23.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
23.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
23.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
22.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
22.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
21.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
21.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
20.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
17.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
17.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
17.5
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
23.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 23.5
Samples: 4
Max nTPM: 26.8
Min nTPM: 21.6
Sample A
Male
26.8
Sample B
Male
21.6
Sample C
Female
22.1
Sample D
Female
23.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.