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RPS10
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS10
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:855.7 nTPM
FANTOM5:233.1 Scaled Tags Per Million
Pig:323.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047268Antibody HPA048084
Glial cells MediumNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

855.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 855.7
Samples: 300

Max nTPM: 2277.8
Min nTPM: 383.6
Std nTPM: 297.5
Median nTPM: 795.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2277.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2213.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2201.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2059.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1968.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1645.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1630.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1628.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1613.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1579.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1540.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1494.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1447.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1444.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1424.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1424.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1380.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1375.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1366.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1352.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1345.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1278.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1267.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1254.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1232.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1205.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1196.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1192.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1190.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1188.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1179.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1174.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1171.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1170.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1166.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1152.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1145.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1143.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1138.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1133.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1133.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1122.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1120.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1116.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1111.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1107.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1101.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1099.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1072.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1063.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1061.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1060.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1057.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1046.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1045.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1045.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1042.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1041.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1040.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1035.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1026.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1023.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1016.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1013.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1011.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1008.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1004.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1003.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1002.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 999.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 997.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 996.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 995.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 990.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 982.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 981.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 977.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 975.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 972.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 970.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 964.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 961.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 958.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 954.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 951.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 946.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 945.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 942.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 931.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 930.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 928.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 927.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 926.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 926.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 924.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 922.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 919.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 918.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 917.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 917.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 914.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 912.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 912.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 911.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 910.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 907.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 902.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 897.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 896.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 895.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 895.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 893.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 888.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 886.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 884.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 884.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 879.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 874.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 873.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 869.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 866.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 863.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 860.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 857.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 857.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 852.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 847.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 847.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 844.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 839.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 839.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 837.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 832.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 828.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 823.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 822.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 822.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 821.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 811.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 810.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 809.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 809.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 808.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 806.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 804.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 801.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 800.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 796.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 795.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 795.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 795.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 795.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 794.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 785.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 785.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 784.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 781.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 779.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 772.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 772.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 770.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 770.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 769.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 769.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 768.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 764.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 762.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 761.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 757.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 753.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 752.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 751.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 750.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 750.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 749.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 749.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 747.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 743.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 740.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 740.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 740.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 738.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 735.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 734.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 733.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 732.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 730.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 730.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 729.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 727.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 726.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 725.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 724.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 723.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 717.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 716.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 715.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 711.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 710.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 705.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 702.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 700.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 698.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 698.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 698.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 696.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 695.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 694.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 694.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 693.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 692.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 689.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 687.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 684.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 682.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 682.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 680.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 678.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 677.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 669.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 669.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 668.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 667.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 660.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 654.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 653.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 652.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 651.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 651.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 650.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 650.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 649.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 644.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 643.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 643.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 641.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 635.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 634.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 628.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 624.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 618.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 617.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 616.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 615.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 606.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 601.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 600.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 600.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 598.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 596.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 593.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 591.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 589.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 585.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 582.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 578.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 578.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 578.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 577.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 572.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 569.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 568.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 568.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 567.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 566.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 564.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 560.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 559.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 555.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 553.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 553.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 550.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 545.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 541.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 537.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 532.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 531.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 524.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 523.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 521.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 519.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 518.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 516.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 515.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 509.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 506.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 499.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 498.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 498.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 492.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 487.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 486.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 485.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 479.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 477.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 469.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 468.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 460.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 408.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 383.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 233.1
FF:10164-103B2 76 years, female 233.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.3
Pig sample Sample description nTPM
Caudate
nTPM: 323.3
Samples: 4

Max nTPM: 356.9
Min nTPM: 270.0
Sample A Female 310.7
Sample B Female 356.9
Sample C Male 355.4
Sample D Male 270.0

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