MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.1 nTPM
HPA Brain:55.5 nTPM
GTEx:73.1 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:144.5 nTPM
Mouse:91.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2411 Female, age 72, unknown 54.9
1870 Female, age 42, unknown 51.9
1827 Male, age 72, unknown 51.2
2019 Male, age 18, unknown 45.5
1833 Male, age 53, unknown 44.3
2828 Female, age 72, unknown 41.6
1830 Male, age 51, unknown 41.2
2219 Male, age 76, both hemispheres 41.2
2586 Male, age 75, left hemisphere 40.5
2666 Male, age 74, left hemisphere 37.8
Dorsal raphe nucleus
nTPM: 54.8
2298 Female, age 72, unknown 69.7
1828 Male, age 53, unknown 54.1
2750 Male, age 76, both hemispheres 50.8
2047 Male, age 72, unknown 50.6
2016 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 55.5
2097 Female, age 72, unknown 68.7
1848 Female, age 42, unknown 56.6
1890 Male, age 53, unknown 52.2
2849 Male, age 72, unknown 44.6
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Periaquaductal grey, anterior
nTPM: 49.6
2502 Female, age 75, unknown 54.0
1947 Male, age 18, unknown 50.3
1795 Male, age 51, unknown 44.5
Periaquaductal grey, dorsal
nTPM: 50.5
1840 Male, age 53, unknown 53.5
2850 Male, age 76, both hemispheres 52.3
2464 Female, age 72, unknown 50.0
1831 Male, age 72, unknown 46.1
Periaquaductal grey, lateral
nTPM: 49.4
2272 Male, age 74, both hemispheres 51.9
2053 Male, age 18, unknown 48.8
2140 Male, age 76, both hemispheres 47.4
Pretectal area
nTPM: 51.4
2007 Male, age 72, unknown 59.4
2224 Female, age 72, unknown 59.0
1817 Female, age 42, unknown 58.4
2273 Male, age 74, both hemispheres 56.8
1816 Male, age 51, unknown 54.2
1944 Female, age 72, unknown 52.9
2667 Female, age 75, unknown 51.7
1815 Male, age 53, unknown 50.0
2825 Male, age 18, unknown 45.2
2316 Male, age 76, right hemisphere 44.5
2407 Male, age 75, both hemispheres 33.5
Red nucleus
nTPM: 43.5
1821 Female, age 72, unknown 56.3
1954 Female, age 42, unknown 50.3
2503 Female, age 72, unknown 45.9
1865 Male, age 51, unknown 45.3
2785 Male, age 18, unknown 45.2
2725 Female, age 75, unknown 43.8
2227 Male, age 72, unknown 43.1
1904 Male, age 53, unknown 42.9
2823 Male, age 76, right hemisphere 42.7
2769 Male, age 72, unknown 42.1
2588 Male, age 74, left hemisphere 35.5
2584 Male, age 75, left hemisphere 29.3
Substantia nigra
nTPM: 52.9
2241 Male, age 72, unknown 72.3
1916 Female, age 42, unknown 62.4
1941 Male, age 53, unknown 60.8
1889 Female, age 72, unknown 59.7
1851 Male, age 51, unknown 54.2
2699 Male, age 18, unknown 48.8
2665 Male, age 74, both hemispheres 45.5
2409 Female, age 72, unknown 45.4
2590 Female, age 75, unknown 44.8
2583 Male, age 75, right hemisphere 35.7
Superior colliculus
nTPM: 45.9
1895 Male, age 76, right hemisphere 50.9
2261 Male, age 18, unknown 50.7
2587 Male, age 74, left hemisphere 49.3
2087 Female, age 72, unknown 48.2
1839 Male, age 51, unknown 48.0
1796 Male, age 53, unknown 47.9
2668 Female, age 75, unknown 46.7
2664 Male, age 75, both hemispheres 40.7
1913 Female, age 42, unknown 40.2
1995 Male, age 72, unknown 36.0
Ventral tegmental area
nTPM: 52.2
2410 Female, age 72, unknown 58.9
1915 Female, age 42, unknown 54.7
2218 Male, age 76, both hemispheres 54.3
2223 Female, age 72, unknown 51.2
1942 Male, age 51, unknown 50.8
2021 Male, age 53, unknown 43.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.1
Samples: 183

Max nTPM: 204.4
Min nTPM: 40.5
Std nTPM: 18.0
Median nTPM: 70.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 204.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 140.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 115.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 115.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 114.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 105.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 103.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 103.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 102.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 101.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.5
FF:10158-103A5 76 years, female 91.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 144.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 135.1
Samples: 4

Max nTPM: 181.9
Min nTPM: 98.5
Sample A Female 181.9
Sample B Female 118.9
Sample C Male 140.9
Sample D Male 98.5
Midbrain
nTPM: 144.5
Samples: 4

Max nTPM: 184.4
Min nTPM: 120.5
Sample A Female 184.4
Sample B Female 133.5
Sample C Male 139.5
Sample D Male 120.5
Periaqueductal gray
nTPM: 126.8
Samples: 3

Max nTPM: 139.3
Min nTPM: 119.1
Sample B Female 121.9
Sample C Male 139.3
Sample D Male 119.1
Superior colliculi
nTPM: 136.6
Samples: 4

Max nTPM: 157.0
Min nTPM: 121.7
Sample A Female 157.0
Sample B Female 122.1
Sample C Male 145.7
Sample D Male 121.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 98.9
Min nTPM: 85.2
Sample A Male 85.2
Sample B Male 95.9
Sample C Female 86.7
Sample D Female 98.9

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