HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA Brain:113.3 nTPM
GTEx:32.3 nTPM
FANTOM5:157.8 Scaled Tags Per Million
Pig:46.0 nTPM
Mouse:21.0 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 113.3
Sample id Sample description nTPM
Hippocampus
nTPM: 65.3
2529 Female, age 94, left hemisphere 83.0
1911 Female, age 85, right hemisphere 82.3
2621 Female, age 67, right hemisphere 67.0
1898 Male, age 80, left hemisphere 57.4
2148 Female, age 91, left hemisphere 54.8
1855 Male, age 76, left hemisphere 47.4
Dentate gyrus
nTPM: 70.4
2530 Female, age 94, left hemisphere 134.3
2010 Male, age 76, both hemispheres 70.6
2528 Male, age 74, both hemispheres 68.4
2246 Female, age 85, both hemispheres 59.5
2531 Female, age 67, both hemispheres 50.1
1927 Female, age 91, both hemispheres 39.8
Entorhinal gyrus
nTPM: 82.2
2117 Female, age 91, right hemisphere 150.9
2764 Male, age 80, right hemisphere 112.3
2613 Female, age 94, left hemisphere 67.6
2686 Male, age 75, right hemisphere 56.3
1938 Female, age 85, left hemisphere 53.8
1787 Male, age 76, left hemisphere 52.1
Hippocampus, CA1
nTPM: 47.3
2082 Female, age 91, right hemisphere 63.4
2527 Male, age 74, both hemispheres 60.1
1873 Female, age 85, both hemispheres 55.8
2749 Male, age 80, left hemisphere 40.4
2045 Male, age 76, both hemispheres 16.9
Hippocampus, CA2
nTPM: 68.2
1963 Male, age 80, left hemisphere 86.5
2437 Female, age 94, left hemisphere 75.3
2249 Male, age 74, both hemispheres 73.5
2113 Female, age 91, right hemisphere 72.2
1940 Female, age 85, left hemisphere 67.6
1892 Male, age 76, both hemispheres 33.8
Hippocampus, CA3
nTPM: 46.0
1891 Female, age 85, both hemispheres 104.9
1867 Male, age 76, both hemispheres 63.8
2436 Male, age 74, both hemispheres 40.7
2137 Male, age 80, left hemisphere 28.5
2620 Female, age 94, left hemisphere 22.3
2861 Female, age 67, both hemispheres 15.7
Parahippocampal cortex
nTPM: 58.0
2692 Male, age 74, both hemispheres 100.7
2532 Female, age 72, left hemisphere 94.3
1990 Female, age 91, right hemisphere 84.4
1850 Male, age 80, both hemispheres 60.3
2245 Female, age 91, both hemispheres 57.7
2018 Male, age 76, both hemispheres 52.6
1933 Female, age 85, both hemispheres 50.1
2693 Female, age 94, both hemispheres 34.8
2250 Female, age 67, right hemisphere 26.7
2622 Female, age 67, right hemisphere 18.2
Perirhinal gyrus
nTPM: 34.0
2848 Male, age 76, right hemisphere 39.2
1794 Male, age 80, right hemisphere 37.3
2521 Female, age 94, right hemisphere 35.9
1847 Female, age 91, left hemisphere 32.2
1841 Female, age 85, right hemisphere 25.1
Subiculum
nTPM: 113.3
2042 Male, age 76, both hemispheres 176.0
1901 Male, age 80, both hemispheres 142.8
2438 Female, age 94, left hemisphere 118.7
1977 Female, age 85, both hemispheres 93.1
2619 Male, age 74, both hemispheres 83.4
2729 Female, age 91, right hemisphere 65.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 32.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.3
Samples: 255

Max nTPM: 163.2
Min nTPM: 1.3
Std nTPM: 24.7
Median nTPM: 25.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 163.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 121.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 120.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 115.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 100.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 94.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 88.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 88.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 87.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 83.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 82.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 157.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 157.8
FF:10153-102I9 76 years, female 205.6
FF:10169-103B7 60 years, female 110.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 46.0
Pig sample Sample description nTPM
Subiculum
nTPM: 23.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.1
Sample A Female 26.6
Sample B Female 26.5
Sample C Male 19.8
Sample D Male 19.1
Dorsal hippocampus
nTPM: 46.0
Samples: 4

Max nTPM: 71.1
Min nTPM: 11.2
Sample A Female 68.8
Sample B Female 33.0
Sample C Male 71.1
Sample D Male 11.2
Entorhinal cortex
nTPM: 17.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.8
Sample A Female 15.7
Sample B Female 20.5
Sample C Male 14.8
Sample D Male 19.6
Ventral hippocampus
nTPM: 33.8
Samples: 4

Max nTPM: 44.0
Min nTPM: 16.3
Sample A Female 37.6
Sample B Female 16.3
Sample C Male 37.2
Sample D Male 44.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 5.1
Sample A Male 14.9
Sample B Male 8.8
Sample C Female 9.9
Sample D Female 5.1
Hippocampal formation
nTPM: 21.0
Samples: 4

Max nTPM: 33.1
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 20.0
Sample C Female 33.1
Sample D Female 19.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
70295805 Antisense, RP_050531_03_H09, Mouse strain C57BL/6J (56 days, male) 0.5

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