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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1444.7 nTPM
HPA Brain:740.0 nTPM
GTEx:1444.7 nTPM
FANTOM5:3661.2 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

740.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 642.1
2565 Male, age 75, midline 782.9
2048 Male, age 55, midline 729.6
1981 Female, age 72, midline 667.1
2194 Female, age 79, both hemispheres 553.6
2816 Male, age 47, midline 477.2
Cervical spinal cord, dorsal horn
nTPM: 537.4
2173 Female, age 72, unknown 661.9
2721 Male, age 90, both hemispheres 611.2
2069 Male, age 47, both hemispheres 559.3
1877 Male, age 55, unknown 557.5
2297 Male, age 75, both hemispheres 484.2
2296 Male, age 66, both hemispheres 350.0
Cervical spinal cord, ventral horn
nTPM: 740.0
2480 Male, age 75, both hemispheres 955.4
2809 Male, age 90, both hemispheres 939.9
2098 Female, age 72, unknown 861.2
2295 Male, age 66, both hemispheres 683.0
2068 Male, age 55, unknown 513.3
2820 Female, age 79, both hemispheres 487.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1444.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1444.7
Samples: 204

Max nTPM: 7918.7
Min nTPM: 338.9
Std nTPM: 1190.7
Median nTPM: 1004.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 7918.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 6063.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 5696.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 5478.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5017.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4618.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 4595.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 4352.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 4348.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 4015.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3981.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 3887.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3792.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3788.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3703.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 3406.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3394.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3344.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3172.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 3148.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3060.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 2988.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2744.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2718.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2623.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2525.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2509.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2447.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2418.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2394.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2387.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 2307.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2275.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2271.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2212.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2200.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2188.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2177.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2137.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2062.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2035.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2026.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2013.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2010.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1931.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1922.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1909.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1904.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1892.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1875.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1842.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1729.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1713.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1709.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1683.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1683.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1630.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1629.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1594.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1585.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1584.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1555.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1546.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1516.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1512.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1488.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1469.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1453.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1436.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1431.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1397.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1393.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1375.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1355.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1351.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1304.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1264.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1257.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1256.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1238.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1216.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1209.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1204.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1200.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1196.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1174.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1158.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1138.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1108.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1097.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1088.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1084.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1080.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1066.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1059.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1059.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1058.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1020.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1017.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1016.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1007.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1006.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1002.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 985.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 983.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 982.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 964.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 959.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 956.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 925.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 922.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 916.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 915.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 907.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 904.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 902.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 901.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 888.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 887.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 882.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 877.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 871.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 866.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 850.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 847.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 840.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 840.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 830.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 822.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 819.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 810.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 807.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 806.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 804.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 793.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 786.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 783.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 782.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 767.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 764.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 761.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 758.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 747.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 743.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 711.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 708.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 707.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 706.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 705.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 704.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 703.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 702.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 684.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 682.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 681.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 680.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 673.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 671.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 671.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 656.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 642.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 641.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 629.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 624.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 623.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 619.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 616.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 610.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 600.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 593.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 592.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 584.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 573.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 568.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 566.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 560.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 556.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 554.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 542.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 537.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 532.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 513.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 509.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 499.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 488.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 480.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 478.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 467.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 464.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 459.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 455.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 453.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 447.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 432.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 430.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 407.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 399.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 395.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 393.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 374.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 362.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 361.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 345.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 338.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3661.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3661.2
FF:10181-103D1 60 years, female 4444.2
FF:10159-103A6 76 years, female 2878.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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