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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:54.8 nTPM
HPA Brain:49.2 nTPM
GTEx:54.8 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:31.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 46.7
2565 Male, age 75, midline 65.2
1981 Female, age 72, midline 52.4
2194 Female, age 79, both hemispheres 39.7
2048 Male, age 55, midline 38.4
2816 Male, age 47, midline 37.9
Cervical spinal cord, dorsal horn
nTPM: 49.2
2069 Male, age 47, both hemispheres 57.2
2296 Male, age 66, both hemispheres 55.0
2173 Female, age 72, unknown 51.7
1877 Male, age 55, unknown 49.8
2297 Male, age 75, both hemispheres 43.8
2721 Male, age 90, both hemispheres 37.9
Cervical spinal cord, ventral horn
nTPM: 48.3
2809 Male, age 90, both hemispheres 62.5
2480 Male, age 75, both hemispheres 53.0
2098 Female, age 72, unknown 52.6
2295 Male, age 66, both hemispheres 48.7
2068 Male, age 55, unknown 40.5
2820 Female, age 79, both hemispheres 32.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 54.8
Samples: 204

Max nTPM: 111.5
Min nTPM: 33.9
Std nTPM: 10.8
Median nTPM: 54.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 111.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 90.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 83.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 82.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 80.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 80.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 79.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 78.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 73.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 73.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 73.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 72.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 72.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 71.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 71.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 70.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 70.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 70.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 69.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 69.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 68.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 67.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 65.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 65.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 65.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 65.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 64.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 64.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 64.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 64.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 64.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 63.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 63.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 63.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 63.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 62.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 62.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 62.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 62.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 62.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 61.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 61.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 61.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 61.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 60.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 60.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 60.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 60.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 60.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 60.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 60.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 60.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 59.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 59.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 59.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 59.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 59.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 59.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 59.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 59.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 59.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 59.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 59.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 58.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 58.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 58.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 58.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 58.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 58.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 57.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 57.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 57.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 57.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 57.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 57.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 56.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 56.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 56.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 56.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 56.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 56.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 55.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 55.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 55.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 55.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 54.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 54.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 54.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 54.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 54.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 54.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 54.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 54.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 54.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 54.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 54.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 53.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 53.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 53.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 53.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 53.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 52.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 52.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 52.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 52.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 51.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 51.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 51.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 51.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 51.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 51.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 51.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 51.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 50.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 50.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 50.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 50.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 50.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 50.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 49.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 49.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 49.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 49.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 49.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 49.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 49.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 49.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 49.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 49.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 49.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 48.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 48.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 48.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 48.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 48.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 48.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 48.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 47.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 47.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 47.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 47.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 47.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 47.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 46.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 46.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 46.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 46.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 46.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 45.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 45.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 45.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 45.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 45.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 45.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 45.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 44.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 44.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 44.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 44.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 44.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 44.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 44.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 44.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 44.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 44.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 43.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 43.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 43.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 42.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 42.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 42.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 42.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 42.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 41.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 41.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 40.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 40.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 39.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 39.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 39.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 37.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 37.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 36.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 36.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 36.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 35.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 33.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.5
FF:10181-103D1 60 years, female 37.5
FF:10159-103A6 76 years, female 27.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.5
Samples: 4

Max nTPM: 35.2
Min nTPM: 27.8
Sample A Female 28.0
Sample B Female 30.9
Sample C Male 35.2
Sample D Male 27.8
Ventral spinal cord
nTPM: 31.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 28.6
Sample A Female 29.2
Sample B Female 31.7
Sample C Male 37.5
Sample D Male 28.6

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