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SNRPD2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SNRPD2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:304.3 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Pig:115.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041437
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 304.3
Samples: 300

Max nTPM: 742.1
Min nTPM: 150.5
Std nTPM: 83.0
Median nTPM: 286.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 742.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 673.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 620.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 582.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 553.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 552.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 514.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 502.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 490.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 488.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 472.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 471.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 465.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 463.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 460.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 458.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 455.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 451.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 448.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 445.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 445.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 437.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 434.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 432.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 426.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 423.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 422.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 417.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 412.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 407.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 406.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 405.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 404.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 402.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 401.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 400.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 397.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 392.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 392.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 390.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 385.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 385.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 383.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 382.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 381.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 379.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 376.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 370.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 365.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 365.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 364.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 364.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 364.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 364.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 363.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 362.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 362.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 359.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 359.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 358.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 357.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 356.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 355.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 354.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 352.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 352.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 352.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 347.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 347.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 346.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 345.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 344.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 344.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 343.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 342.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 340.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 340.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 339.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 338.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 338.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 337.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 335.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 335.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 335.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 334.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 332.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 331.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 330.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 329.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 329.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 327.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 325.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 325.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 325.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 325.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 322.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 321.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 321.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 320.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 320.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 319.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 317.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 317.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 316.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 316.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 316.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 313.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 313.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 313.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 312.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 312.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 312.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 311.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 310.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 310.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 310.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 309.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 309.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 308.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 305.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 305.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 304.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 301.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 300.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 299.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 298.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 298.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 298.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 297.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 297.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 297.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 296.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 295.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 294.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 292.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 292.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 291.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 291.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 291.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 290.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 290.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 289.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 289.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 289.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 288.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 288.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 288.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 287.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 286.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 286.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 285.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 285.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 285.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 285.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 285.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 284.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 284.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 284.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 284.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 284.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 283.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 282.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 282.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 281.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 281.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 280.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 280.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 280.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 279.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 278.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 277.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 277.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 276.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 276.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 276.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 275.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 275.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 275.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 275.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 273.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 273.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 272.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 272.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 272.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 271.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 270.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 270.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 269.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 269.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 269.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 269.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 268.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 268.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 267.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 267.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 267.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 266.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 266.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 266.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 265.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 264.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 264.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 261.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 260.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 259.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 259.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 258.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 257.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 257.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 257.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 256.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 256.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 256.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 255.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 254.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 253.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 253.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 253.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 252.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 252.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 250.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 250.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 250.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 250.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 249.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 249.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 249.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 248.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 248.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 247.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 246.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 246.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 246.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 245.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 245.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 244.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 244.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 242.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 241.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 241.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 241.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 240.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 239.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 239.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 239.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 238.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 237.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 236.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 235.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 235.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 234.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 234.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 233.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 233.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 233.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 233.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 233.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 231.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 230.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 229.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 226.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 225.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 223.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 222.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 219.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 219.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 217.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 217.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 216.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 216.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 216.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 215.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 214.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 212.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 209.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 209.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 209.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 209.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 208.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 207.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 207.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 205.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 204.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 202.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 201.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 199.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 198.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 197.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 197.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 197.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 193.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 188.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 185.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 182.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 180.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 167.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 164.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 158.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 150.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.4
FF:10164-103B2 76 years, female 96.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.3
Pig sample Sample description nTPM
Caudate
nTPM: 115.3
Samples: 4

Max nTPM: 132.5
Min nTPM: 92.9
Sample A Female 108.6
Sample B Female 127.3
Sample C Male 132.5
Sample D Male 92.9

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