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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:48.9 nTPM
HPA Brain:31.4 nTPM
GTEx:48.9 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:46.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 23.6
1981 Female, age 72, midline 31.2
2565 Male, age 75, midline 24.3
2816 Male, age 47, midline 22.6
2194 Female, age 79, both hemispheres 21.1
2048 Male, age 55, midline 18.7
Cervical spinal cord, dorsal horn
nTPM: 28.2
2069 Male, age 47, both hemispheres 32.9
2173 Female, age 72, unknown 31.0
1877 Male, age 55, unknown 28.8
2296 Male, age 66, both hemispheres 28.1
2297 Male, age 75, both hemispheres 26.8
2721 Male, age 90, both hemispheres 21.7
Cervical spinal cord, ventral horn
nTPM: 31.4
2809 Male, age 90, both hemispheres 41.5
2480 Male, age 75, both hemispheres 37.3
2098 Female, age 72, unknown 35.8
2295 Male, age 66, both hemispheres 28.8
2068 Male, age 55, unknown 27.4
2820 Female, age 79, both hemispheres 17.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 48.9
Samples: 204

Max nTPM: 128.3
Min nTPM: 24.7
Std nTPM: 15.7
Median nTPM: 45.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 128.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 117.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 107.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 104.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 90.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 89.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 86.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 86.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 86.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 83.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 80.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 77.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 76.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 74.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 71.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 71.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 68.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 68.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 67.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 67.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 64.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 64.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 64.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 64.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 64.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 63.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 61.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 61.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 61.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 60.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 60.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 60.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 60.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 59.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 59.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 58.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 58.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 57.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 57.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 56.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 56.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 56.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 55.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 55.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 54.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 54.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 54.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 53.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 53.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 53.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 52.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 52.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 52.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 52.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 51.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 51.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 50.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 50.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 50.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 50.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 50.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 49.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 49.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 49.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 49.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 49.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 49.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 49.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 48.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 48.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 48.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 48.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 47.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 47.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 47.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 47.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 47.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 47.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 46.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 46.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 46.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 46.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 46.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 46.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 46.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 46.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 45.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 45.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 45.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 45.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 45.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 45.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 45.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 45.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 45.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 45.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 45.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 44.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 44.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 44.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 44.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 44.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 44.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 44.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 44.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 44.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 43.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 43.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 43.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 43.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 43.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 43.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 42.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 42.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 42.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 41.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 41.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 41.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 41.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 41.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 41.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 41.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 41.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 41.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 40.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 40.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 40.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 40.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 40.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 40.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 40.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 40.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 39.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 39.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 39.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 39.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 39.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 39.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 39.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 38.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 38.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 38.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 38.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 38.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 38.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 38.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 38.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 38.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 37.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 37.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 37.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 37.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 37.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 36.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 36.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 36.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 36.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 35.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 35.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 35.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 35.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 35.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 35.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 34.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 34.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 34.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 34.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 34.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 34.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 33.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 33.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 33.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 33.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 33.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 32.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 32.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 32.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 32.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 31.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 31.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 31.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 31.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 31.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 30.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 30.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 30.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 30.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 29.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 24.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.4
FF:10181-103D1 60 years, female 21.1
FF:10159-103A6 76 years, female 13.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 46.3
Samples: 4

Max nTPM: 58.9
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 44.3
Sample C Male 58.9
Sample D Male 42.3
Ventral spinal cord
nTPM: 43.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 35.7
Sample A Female 35.7
Sample B Female 45.7
Sample C Male 48.3
Sample D Male 43.6

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