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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:120.8 nTPM
HPA Brain:116.3 nTPM
GTEx:120.8 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:61.1 nTPM
Mouse:126.5 nTPM
Allen mouse:8.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.3
Sample id Sample description nTPM
Amygdala
nTPM: 93.6
2517 Female, age 94, left hemisphere 104.0
2814 Male, age 76, right hemisphere 100.2
1987 Female, age 91, left hemisphere 93.4
2695 Female, age 67, right hemisphere 87.5
2514 Male, age 75, right hemisphere 83.1
Basal amygdala
nTPM: 115.4
2243 Female, age 91, right hemisphere 152.2
2685 Female, age 94, left hemisphere 135.1
2110 Male, age 80, left hemisphere 106.7
2609 Male, age 75, right hemisphere 100.6
1955 Male, age 76, both hemispheres 99.1
2827 Female, age 67, right hemisphere 99.0
Central amygdala
nTPM: 112.0
2826 Female, age 94, left hemisphere 129.7
2239 Male, age 80, left hemisphere 119.9
2515 Male, age 75, right hemisphere 111.9
2701 Female, age 91, right hemisphere 104.0
1905 Male, age 76, both hemispheres 94.2
Corticomedial amygdala
nTPM: 116.3
2242 Female, age 91, right hemisphere 144.7
2829 Male, age 80, left hemisphere 129.7
2535 Female, age 67, right hemisphere 115.8
2429 Female, age 94, left hemisphere 111.4
2240 Male, age 76, both hemispheres 100.4
2428 Male, age 75, right hemisphere 95.7
Lateral amygdala
nTPM: 102.2
2534 Female, age 94, left hemisphere 135.7
2255 Female, age 91, right hemisphere 107.5
2256 Male, age 80, left hemisphere 107.2
1883 Male, age 76, both hemispheres 102.0
2516 Male, age 75, right hemisphere 83.3
2830 Female, age 67, right hemisphere 77.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 120.8
Samples: 181

Max nTPM: 240.1
Min nTPM: 47.9
Std nTPM: 32.8
Median nTPM: 115.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 240.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 222.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 210.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 206.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 200.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 192.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 190.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 189.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 185.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 184.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 183.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 182.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 180.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 175.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 170.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 170.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 160.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 159.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 157.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 157.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 155.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 155.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 154.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 153.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 148.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 148.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 148.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 147.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 147.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 146.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 145.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 143.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 143.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 141.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 141.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 138.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 138.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 138.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 137.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 136.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 135.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 134.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 134.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 134.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 134.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 133.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 133.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 132.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 130.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 130.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 128.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 125.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 125.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 124.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 123.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 123.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 123.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 123.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 122.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 122.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 121.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 121.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 118.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 117.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 116.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 116.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 115.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 115.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 115.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 114.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 114.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 113.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 113.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 112.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 111.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 111.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 110.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 110.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 109.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 108.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 108.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 108.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 107.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 106.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 106.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 105.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 105.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 104.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 104.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 104.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 104.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 104.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 103.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 102.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 102.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 102.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 101.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 101.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 100.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 99.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 98.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 98.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 97.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 97.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 95.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 95.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 94.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 93.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 93.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 93.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 92.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 92.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 91.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 90.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 90.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 89.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 88.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 87.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 86.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 85.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 85.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 84.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 84.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 83.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 83.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 81.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 81.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 75.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 67.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 61.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 58.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 47.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 59.0
FF:10151-102I7 76 years, female 59.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.1
Pig sample Sample description nTPM
Amygdala
nTPM: 61.1
Samples: 4

Max nTPM: 98.8
Min nTPM: 41.0
Sample A Female 98.8
Sample B Female 41.0
Sample C Male 49.2
Sample D Male 55.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 126.5
Samples: 4

Max nTPM: 155.8
Min nTPM: 106.5
Sample A Male 155.8
Sample B Male 106.5
Sample C Female 111.8
Sample D Female 131.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.8
74579404 Antisense, RP_060215_01_C07, Mouse strain C57BL/6J (56 days, male) 15.5
79912548 Antisense, RP_080109_01_B02, Mouse strain C57BL/6J (56 days, male) 2.1

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