MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:319.0 nTPM
HPA Brain:237.8 nTPM
GTEx:319.0 nTPM
FANTOM5:376.3 Scaled Tags Per Million
Pig:501.3 nTPM
Mouse:435.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 237.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 157.6
2219 Male, age 76, both hemispheres 185.6
1870 Female, age 42, unknown 175.6
1827 Male, age 72, unknown 174.2
1833 Male, age 53, unknown 162.2
2828 Female, age 72, unknown 157.6
2666 Male, age 74, left hemisphere 154.8
1830 Male, age 51, unknown 150.4
2411 Female, age 72, unknown 149.1
2019 Male, age 18, unknown 133.6
2586 Male, age 75, left hemisphere 132.9
Dorsal raphe nucleus
nTPM: 156.7
2047 Male, age 72, unknown 174.1
2750 Male, age 76, both hemispheres 172.4
1828 Male, age 53, unknown 158.2
2298 Female, age 72, unknown 153.0
2016 Female, age 72, unknown 126.0
Inferior colliculus
nTPM: 163.5
2849 Male, age 72, unknown 201.7
1848 Female, age 42, unknown 166.4
1890 Male, age 53, unknown 145.9
2097 Female, age 72, unknown 140.0
Median raphe nucleus
nTPM: 237.8
2220 Male, age 76, midline 237.8
Periaquaductal grey, anterior
nTPM: 179.7
1947 Male, age 18, unknown 191.4
1795 Male, age 51, unknown 186.4
2502 Female, age 75, unknown 161.4
Periaquaductal grey, dorsal
nTPM: 160.0
2850 Male, age 76, both hemispheres 201.6
1840 Male, age 53, unknown 159.2
1831 Male, age 72, unknown 149.5
2464 Female, age 72, unknown 129.6
Periaquaductal grey, lateral
nTPM: 149.9
2272 Male, age 74, both hemispheres 157.0
2140 Male, age 76, both hemispheres 150.5
2053 Male, age 18, unknown 142.1
Pretectal area
nTPM: 175.4
1817 Female, age 42, unknown 210.4
1944 Female, age 72, unknown 208.8
1816 Male, age 51, unknown 191.1
2007 Male, age 72, unknown 183.9
1815 Male, age 53, unknown 182.5
2224 Female, age 72, unknown 179.3
2667 Female, age 75, unknown 178.6
2825 Male, age 18, unknown 167.7
2407 Male, age 75, both hemispheres 156.2
2273 Male, age 74, both hemispheres 152.7
2316 Male, age 76, right hemisphere 117.8
Red nucleus
nTPM: 145.9
2725 Female, age 75, unknown 171.4
1821 Female, age 72, unknown 155.3
2785 Male, age 18, unknown 151.3
1865 Male, age 51, unknown 150.2
2584 Male, age 75, left hemisphere 149.7
2823 Male, age 76, right hemisphere 149.4
2227 Male, age 72, unknown 141.9
2503 Female, age 72, unknown 141.2
2769 Male, age 72, unknown 140.3
1954 Female, age 42, unknown 137.0
2588 Male, age 74, left hemisphere 132.9
1904 Male, age 53, unknown 130.5
Substantia nigra
nTPM: 188.2
1916 Female, age 42, unknown 245.4
1941 Male, age 53, unknown 222.9
1889 Female, age 72, unknown 211.7
2699 Male, age 18, unknown 207.0
1851 Male, age 51, unknown 185.9
2665 Male, age 74, both hemispheres 178.5
2409 Female, age 72, unknown 177.8
2241 Male, age 72, unknown 160.4
2590 Female, age 75, unknown 148.9
2583 Male, age 75, right hemisphere 143.6
Superior colliculus
nTPM: 158.7
2587 Male, age 74, left hemisphere 181.7
2668 Female, age 75, unknown 180.0
1796 Male, age 53, unknown 175.6
2261 Male, age 18, unknown 162.7
1895 Male, age 76, right hemisphere 161.3
2087 Female, age 72, unknown 159.2
1913 Female, age 42, unknown 155.0
1839 Male, age 51, unknown 147.8
2664 Male, age 75, both hemispheres 138.6
1995 Male, age 72, unknown 124.9
Ventral tegmental area
nTPM: 175.9
2218 Male, age 76, both hemispheres 222.0
1915 Female, age 42, unknown 191.0
2223 Female, age 72, unknown 170.2
2410 Female, age 72, unknown 164.2
1942 Male, age 51, unknown 163.7
2021 Male, age 53, unknown 144.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 319.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 319.0
Samples: 183

Max nTPM: 629.9
Min nTPM: 181.2
Std nTPM: 79.1
Median nTPM: 301.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 629.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 545.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 530.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 520.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 504.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 491.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 478.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 465.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 465.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 462.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 459.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 376.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 376.3
FF:10158-103A5 76 years, female 376.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 501.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 501.3
Samples: 4

Max nTPM: 644.8
Min nTPM: 345.0
Sample A Female 644.8
Sample B Female 402.6
Sample C Male 612.8
Sample D Male 345.0
Midbrain
nTPM: 494.4
Samples: 4

Max nTPM: 563.8
Min nTPM: 430.3
Sample A Female 430.3
Sample B Female 563.8
Sample C Male 484.9
Sample D Male 498.7
Periaqueductal gray
nTPM: 496.5
Samples: 3

Max nTPM: 555.3
Min nTPM: 445.7
Sample B Female 488.6
Sample C Male 555.3
Sample D Male 445.7
Superior colliculi
nTPM: 484.2
Samples: 4

Max nTPM: 616.8
Min nTPM: 331.8
Sample A Female 616.8
Sample B Female 331.8
Sample C Male 491.9
Sample D Male 496.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 435.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 435.7
Samples: 4

Max nTPM: 461.9
Min nTPM: 415.6
Sample A Male 442.2
Sample B Male 423.2
Sample C Female 415.6
Sample D Female 461.9

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