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  • TISSUE

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  • MCF2L
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:33.5 nTPM
HPA Brain:132.5 nTPM
GTEx:33.5 nTPM
FANTOM5:155.9 Scaled Tags Per Million
Pig:16.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 98.8
2194 Female, age 79, both hemispheres 130.5
2816 Male, age 47, midline 97.2
1981 Female, age 72, midline 93.7
2048 Male, age 55, midline 87.7
2565 Male, age 75, midline 85.0
Cervical spinal cord, dorsal horn
nTPM: 107.2
2297 Male, age 75, both hemispheres 137.3
2721 Male, age 90, both hemispheres 133.2
1877 Male, age 55, unknown 100.5
2173 Female, age 72, unknown 96.9
2069 Male, age 47, both hemispheres 96.4
2296 Male, age 66, both hemispheres 78.7
Cervical spinal cord, ventral horn
nTPM: 132.5
2820 Female, age 79, both hemispheres 176.5
2480 Male, age 75, both hemispheres 153.3
2068 Male, age 55, unknown 143.6
2809 Male, age 90, both hemispheres 135.8
2295 Male, age 66, both hemispheres 119.7
2098 Female, age 72, unknown 66.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 33.5
Samples: 204

Max nTPM: 81.6
Min nTPM: 10.0
Std nTPM: 12.1
Median nTPM: 31.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 81.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 73.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 68.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 67.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 65.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 64.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 59.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 56.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 56.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 53.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 53.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 52.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 52.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 52.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 51.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 51.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 50.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 50.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 49.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 49.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 49.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 48.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 48.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 47.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 46.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 46.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 46.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 46.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 45.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 44.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 44.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 44.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 43.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 42.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 42.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 42.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 41.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 40.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 40.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 40.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 40.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 40.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 39.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 39.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 39.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 39.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 38.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 38.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 38.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 37.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 37.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 37.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 36.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 36.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 36.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 36.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 36.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 36.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 36.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 36.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 36.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 35.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 35.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 35.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 35.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 35.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 35.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 35.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 35.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 35.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 35.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 34.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 34.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 34.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 34.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 33.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 33.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 32.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 32.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 32.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 32.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 32.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 32.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 32.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 32.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 32.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 32.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 32.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 32.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 31.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 31.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 31.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 31.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 31.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 31.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 31.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 31.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 31.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 31.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 31.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 30.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 30.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 30.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 30.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 29.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 29.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 29.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 29.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 29.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 29.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 29.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 29.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 29.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 29.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 28.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 28.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 28.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 28.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 28.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 28.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 28.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 28.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 28.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 28.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 28.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 27.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 27.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 27.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 27.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 27.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 27.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 26.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 26.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 26.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 26.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 26.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 26.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 25.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 25.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 25.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 25.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 25.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 25.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 25.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 24.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 24.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 24.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 24.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 24.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 23.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 23.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 23.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 23.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 23.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 23.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 23.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 23.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 23.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 22.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 22.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 22.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 22.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 22.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 22.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 22.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 21.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 21.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 21.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 20.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 20.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 20.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 20.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 20.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 20.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 20.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 19.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 19.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 19.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 19.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 18.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 18.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 18.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 18.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 17.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 17.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 16.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 16.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 15.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 15.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 14.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 13.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 11.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 10.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

155.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 155.9
FF:10159-103A6 76 years, female 184.9
FF:10181-103D1 60 years, female 126.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.0
Samples: 4

Max nTPM: 22.4
Min nTPM: 10.3
Sample A Female 22.4
Sample B Female 13.6
Sample C Male 10.3
Sample D Male 17.7
Ventral spinal cord
nTPM: 15.3
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.4
Sample A Female 16.4
Sample B Female 15.5
Sample C Male 13.4
Sample D Male 16.0

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