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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.2
nTPM
HPA Brain:
12.1
nTPM
GTEx:
14.2
nTPM
FANTOM5:
32.1
Scaled Tags Per Million
Pig:
23.4
nTPM
Mouse:
40.1
nTPM
Allen mouse:
2.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 10.1
2411
Female, age 72, unknown
12.0
2666
Male, age 74, left hemisphere
11.5
1827
Male, age 72, unknown
11.2
2019
Male, age 18, unknown
11.1
1870
Female, age 42, unknown
10.2
2586
Male, age 75, left hemisphere
10.1
1833
Male, age 53, unknown
9.9
2828
Female, age 72, unknown
9.1
2219
Male, age 76, both hemispheres
8.0
1830
Male, age 51, unknown
7.5
Dorsal raphe nucleus nTPM: 12.1
2047
Male, age 72, unknown
13.4
2016
Female, age 72, unknown
13.2
2750
Male, age 76, both hemispheres
11.7
1828
Male, age 53, unknown
11.4
2298
Female, age 72, unknown
11.0
Inferior colliculus nTPM: 9.3
2097
Female, age 72, unknown
11.0
1890
Male, age 53, unknown
10.8
1848
Female, age 42, unknown
8.2
2849
Male, age 72, unknown
7.4
Median raphe nucleus nTPM: 10.3
2220
Male, age 76, midline
10.3
Periaquaductal grey, anterior nTPM: 9.9
2502
Female, age 75, unknown
11.5
1947
Male, age 18, unknown
9.7
1795
Male, age 51, unknown
8.5
Periaquaductal grey, dorsal nTPM: 9.8
2464
Female, age 72, unknown
13.1
1840
Male, age 53, unknown
9.7
2850
Male, age 76, both hemispheres
8.5
1831
Male, age 72, unknown
7.9
Periaquaductal grey, lateral nTPM: 9.0
2053
Male, age 18, unknown
9.8
2140
Male, age 76, both hemispheres
9.3
2272
Male, age 74, both hemispheres
8.0
Pretectal area nTPM: 9.9
2007
Male, age 72, unknown
11.8
1816
Male, age 51, unknown
11.3
1815
Male, age 53, unknown
11.0
1944
Female, age 72, unknown
11.0
2667
Female, age 75, unknown
10.4
2407
Male, age 75, both hemispheres
9.8
1817
Female, age 42, unknown
9.4
2273
Male, age 74, both hemispheres
8.8
2825
Male, age 18, unknown
8.5
2224
Female, age 72, unknown
8.4
2316
Male, age 76, right hemisphere
8.3
Red nucleus nTPM: 11.5
1821
Female, age 72, unknown
14.3
1904
Male, age 53, unknown
13.0
2503
Female, age 72, unknown
12.5
1865
Male, age 51, unknown
12.4
1954
Female, age 42, unknown
12.3
2769
Male, age 72, unknown
11.8
2823
Male, age 76, right hemisphere
11.2
2588
Male, age 74, left hemisphere
11.0
2227
Male, age 72, unknown
10.8
2584
Male, age 75, left hemisphere
10.1
2725
Female, age 75, unknown
9.6
2785
Male, age 18, unknown
9.5
Substantia nigra nTPM: 11.4
1916
Female, age 42, unknown
16.1
1851
Male, age 51, unknown
14.6
2409
Female, age 72, unknown
11.2
2699
Male, age 18, unknown
11.1
1889
Female, age 72, unknown
11.0
2665
Male, age 74, both hemispheres
10.8
2590
Female, age 75, unknown
10.6
2241
Male, age 72, unknown
9.6
1941
Male, age 53, unknown
9.3
2583
Male, age 75, right hemisphere
9.3
Superior colliculus nTPM: 9.9
1995
Male, age 72, unknown
11.9
1913
Female, age 42, unknown
11.5
2261
Male, age 18, unknown
11.5
2668
Female, age 75, unknown
10.1
2587
Male, age 74, left hemisphere
9.9
1839
Male, age 51, unknown
9.6
1895
Male, age 76, right hemisphere
9.6
1796
Male, age 53, unknown
9.3
2664
Male, age 75, both hemispheres
8.0
2087
Female, age 72, unknown
7.7
Ventral tegmental area nTPM: 10.9
2410
Female, age 72, unknown
13.6
1915
Female, age 42, unknown
12.3
1942
Male, age 51, unknown
10.2
2021
Male, age 53, unknown
9.9
2223
Female, age 72, unknown
9.7
2218
Male, age 76, both hemispheres
9.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14.2
Samples: 139
Max nTPM: 34.5
Min nTPM: 6.2
Std nTPM: 4.1
Median nTPM: 13.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
34.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
26.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
22.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
22.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
22.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
22.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
21.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
18.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
18.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
18.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
18.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
18.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
18.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
18.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
17.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
17.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
17.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
17.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
17.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
16.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
16.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
16.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
16.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
16.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
16.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
16.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
15.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
15.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
15.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
15.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
15.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
15.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
15.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
15.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
15.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
15.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
14.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
14.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
14.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
14.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
14.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
14.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
13.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
13.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
13.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
13.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
13.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
12.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
12.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
12.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
12.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
12.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
12.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
12.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
11.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
11.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
11.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
11.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
11.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
11.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
11.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
11.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
11.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
11.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
10.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
10.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
10.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
9.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
9.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
9.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
8.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
8.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
8.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
8.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
7.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
7.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 40.1
Samples: 4
Max nTPM: 44.9
Min nTPM: 35.7
Sample A
Male
41.6
Sample B
Male
35.7
Sample C
Female
38.2
Sample D
Female
44.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.