MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.7 nTPM
HPA Brain:130.0 nTPM
GTEx:98.7 nTPM
FANTOM5:169.1 Scaled Tags Per Million
Pig:88.8 nTPM
Mouse:38.6 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 130.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.9
2019 Male, age 18, unknown 135.8
1870 Female, age 42, unknown 129.7
2666 Male, age 74, left hemisphere 128.7
1830 Male, age 51, unknown 128.2
1833 Male, age 53, unknown 128.0
2411 Female, age 72, unknown 121.9
1827 Male, age 72, unknown 113.4
2828 Female, age 72, unknown 110.0
2219 Male, age 76, both hemispheres 103.1
2586 Male, age 75, left hemisphere 100.0
Dorsal raphe nucleus
nTPM: 115.9
2016 Female, age 72, unknown 127.6
2750 Male, age 76, both hemispheres 127.2
1828 Male, age 53, unknown 114.8
2298 Female, age 72, unknown 106.7
2047 Male, age 72, unknown 103.1
Inferior colliculus
nTPM: 110.8
2097 Female, age 72, unknown 118.2
1890 Male, age 53, unknown 114.1
1848 Female, age 42, unknown 105.4
2849 Male, age 72, unknown 105.3
Median raphe nucleus
nTPM: 126.7
2220 Male, age 76, midline 126.7
Periaquaductal grey, anterior
nTPM: 112.5
2502 Female, age 75, unknown 120.6
1947 Male, age 18, unknown 118.9
1795 Male, age 51, unknown 98.0
Periaquaductal grey, dorsal
nTPM: 117.8
2850 Male, age 76, both hemispheres 124.3
1831 Male, age 72, unknown 120.1
2464 Female, age 72, unknown 117.2
1840 Male, age 53, unknown 109.8
Periaquaductal grey, lateral
nTPM: 111.6
2272 Male, age 74, both hemispheres 115.0
2053 Male, age 18, unknown 110.1
2140 Male, age 76, both hemispheres 109.5
Pretectal area
nTPM: 121.1
1944 Female, age 72, unknown 147.5
1815 Male, age 53, unknown 134.3
1816 Male, age 51, unknown 134.2
1817 Female, age 42, unknown 129.7
2273 Male, age 74, both hemispheres 124.0
2007 Male, age 72, unknown 117.3
2825 Male, age 18, unknown 111.0
2316 Male, age 76, right hemisphere 110.3
2667 Female, age 75, unknown 108.9
2224 Female, age 72, unknown 107.7
2407 Male, age 75, both hemispheres 107.4
Red nucleus
nTPM: 130.0
2503 Female, age 72, unknown 144.2
1865 Male, age 51, unknown 141.7
1821 Female, age 72, unknown 139.5
1904 Male, age 53, unknown 139.3
1954 Female, age 42, unknown 136.2
2823 Male, age 76, right hemisphere 129.7
2725 Female, age 75, unknown 127.2
2785 Male, age 18, unknown 123.9
2227 Male, age 72, unknown 123.1
2769 Male, age 72, unknown 121.6
2588 Male, age 74, left hemisphere 120.5
2584 Male, age 75, left hemisphere 113.6
Substantia nigra
nTPM: 116.6
2241 Male, age 72, unknown 131.7
2409 Female, age 72, unknown 128.0
1889 Female, age 72, unknown 122.8
2665 Male, age 74, both hemispheres 121.4
2699 Male, age 18, unknown 118.9
2590 Female, age 75, unknown 116.9
1941 Male, age 53, unknown 109.2
2583 Male, age 75, right hemisphere 107.1
1851 Male, age 51, unknown 106.8
1916 Female, age 42, unknown 103.1
Superior colliculus
nTPM: 121.7
1995 Male, age 72, unknown 149.0
1913 Female, age 42, unknown 143.9
2087 Female, age 72, unknown 126.6
2668 Female, age 75, unknown 125.8
2587 Male, age 74, left hemisphere 124.9
1895 Male, age 76, right hemisphere 114.3
1839 Male, age 51, unknown 113.8
2261 Male, age 18, unknown 112.3
1796 Male, age 53, unknown 106.4
2664 Male, age 75, both hemispheres 99.5
Ventral tegmental area
nTPM: 108.1
2223 Female, age 72, unknown 120.4
1942 Male, age 51, unknown 109.0
2021 Male, age 53, unknown 106.0
2218 Male, age 76, both hemispheres 105.9
2410 Female, age 72, unknown 104.2
1915 Female, age 42, unknown 103.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.7
Samples: 183

Max nTPM: 207.7
Min nTPM: 38.5
Std nTPM: 29.7
Median nTPM: 96.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 207.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 203.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 188.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 172.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 171.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 157.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 156.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 154.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 154.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 153.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 151.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 169.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 169.1
FF:10158-103A5 76 years, female 169.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.1
Samples: 4

Max nTPM: 92.8
Min nTPM: 69.0
Sample A Female 80.7
Sample B Female 69.0
Sample C Male 73.7
Sample D Male 92.8
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 143.4
Min nTPM: 61.9
Sample A Female 143.4
Sample B Female 82.5
Sample C Male 67.3
Sample D Male 61.9
Periaqueductal gray
nTPM: 63.9
Samples: 3

Max nTPM: 70.8
Min nTPM: 60.0
Sample B Female 60.0
Sample C Male 61.0
Sample D Male 70.8
Superior colliculi
nTPM: 71.8
Samples: 4

Max nTPM: 78.6
Min nTPM: 59.7
Sample A Female 74.2
Sample B Female 59.7
Sample C Male 74.8
Sample D Male 78.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 44.0
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 37.3
Sample C Female 44.0
Sample D Female 37.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74635451 Antisense, RP_060215_03_H05, Mouse strain C57BL/6J (56 days, male) 0.7

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