MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.8 nTPM
HPA Brain:226.8 nTPM
GTEx:145.8 nTPM
FANTOM5:902.8 Scaled Tags Per Million
Mouse:10.1 nTPM
Allen mouse:8.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.2
2411 Female, age 72, unknown 258.3
1870 Female, age 42, unknown 240.8
1830 Male, age 51, unknown 225.0
1833 Male, age 53, unknown 210.4
2019 Male, age 18, unknown 207.9
2828 Female, age 72, unknown 189.8
2219 Male, age 76, both hemispheres 142.3
1827 Male, age 72, unknown 126.7
2666 Male, age 74, left hemisphere 89.0
2586 Male, age 75, left hemisphere 62.0
Dorsal raphe nucleus
nTPM: 162.3
2750 Male, age 76, both hemispheres 307.4
2016 Female, age 72, unknown 160.3
2298 Female, age 72, unknown 139.8
1828 Male, age 53, unknown 121.2
2047 Male, age 72, unknown 82.6
Inferior colliculus
nTPM: 118.5
1848 Female, age 42, unknown 125.4
2849 Male, age 72, unknown 118.6
1890 Male, age 53, unknown 116.8
2097 Female, age 72, unknown 113.0
Median raphe nucleus
nTPM: 118.9
2220 Male, age 76, midline 118.9
Periaquaductal grey, anterior
nTPM: 115.2
2502 Female, age 75, unknown 137.1
1947 Male, age 18, unknown 110.6
1795 Male, age 51, unknown 97.8
Periaquaductal grey, dorsal
nTPM: 100.9
2464 Female, age 72, unknown 135.6
1831 Male, age 72, unknown 106.2
2850 Male, age 76, both hemispheres 89.4
1840 Male, age 53, unknown 72.3
Periaquaductal grey, lateral
nTPM: 133.1
2272 Male, age 74, both hemispheres 188.0
2053 Male, age 18, unknown 119.3
2140 Male, age 76, both hemispheres 91.9
Pretectal area
nTPM: 136.6
2273 Male, age 74, both hemispheres 193.9
2316 Male, age 76, right hemisphere 190.2
2667 Female, age 75, unknown 172.2
1815 Male, age 53, unknown 156.6
2407 Male, age 75, both hemispheres 142.5
2224 Female, age 72, unknown 130.7
1817 Female, age 42, unknown 126.7
2825 Male, age 18, unknown 121.2
2007 Male, age 72, unknown 114.4
1944 Female, age 72, unknown 83.7
1816 Male, age 51, unknown 70.6
Red nucleus
nTPM: 226.8
1865 Male, age 51, unknown 282.4
1904 Male, age 53, unknown 282.3
2227 Male, age 72, unknown 267.5
2769 Male, age 72, unknown 264.8
2823 Male, age 76, right hemisphere 254.8
2785 Male, age 18, unknown 253.4
1821 Female, age 72, unknown 250.7
2503 Female, age 72, unknown 223.4
1954 Female, age 42, unknown 214.7
2725 Female, age 75, unknown 172.0
2588 Male, age 74, left hemisphere 132.9
2584 Male, age 75, left hemisphere 122.7
Substantia nigra
nTPM: 115.6
1851 Male, age 51, unknown 148.1
1889 Female, age 72, unknown 142.1
2409 Female, age 72, unknown 134.8
2699 Male, age 18, unknown 132.2
2583 Male, age 75, right hemisphere 124.0
1941 Male, age 53, unknown 108.2
2590 Female, age 75, unknown 107.0
2241 Male, age 72, unknown 105.2
1916 Female, age 42, unknown 101.7
2665 Male, age 74, both hemispheres 52.6
Superior colliculus
nTPM: 153.1
1913 Female, age 42, unknown 246.2
1995 Male, age 72, unknown 244.8
2587 Male, age 74, left hemisphere 181.8
1895 Male, age 76, right hemisphere 178.0
1839 Male, age 51, unknown 150.3
1796 Male, age 53, unknown 137.5
2668 Female, age 75, unknown 120.1
2087 Female, age 72, unknown 108.1
2261 Male, age 18, unknown 95.8
2664 Male, age 75, both hemispheres 68.9
Ventral tegmental area
nTPM: 163.4
2223 Female, age 72, unknown 247.2
2410 Female, age 72, unknown 189.2
2021 Male, age 53, unknown 140.8
2218 Male, age 76, both hemispheres 138.9
1942 Male, age 51, unknown 135.9
1915 Female, age 42, unknown 128.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 145.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.8
Samples: 183

Max nTPM: 538.3
Min nTPM: 13.2
Std nTPM: 88.7
Median nTPM: 115.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 538.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 463.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 443.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 398.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 385.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 375.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 370.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 363.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 354.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 349.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 345.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 902.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 902.8
FF:10158-103A5 76 years, female 902.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.9
Sample A Male 10.9
Sample B Male 9.7
Sample C Female 8.9
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
532642 Antisense, RP_040810_02_H07, Mouse strain C57BL/6J (56 days, male) 8.3

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