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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:164.5 nTPM
HPA Brain:90.8 nTPM
GTEx:164.5 nTPM
FANTOM5:302.4 Scaled Tags Per Million
Pig:100.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 70.1
1981 Female, age 72, midline 97.9
2048 Male, age 55, midline 86.7
2194 Female, age 79, both hemispheres 67.1
2816 Male, age 47, midline 61.6
2565 Male, age 75, midline 37.3
Cervical spinal cord, dorsal horn
nTPM: 90.8
2296 Male, age 66, both hemispheres 143.2
2173 Female, age 72, unknown 128.2
2069 Male, age 47, both hemispheres 97.4
1877 Male, age 55, unknown 73.9
2297 Male, age 75, both hemispheres 59.6
2721 Male, age 90, both hemispheres 42.8
Cervical spinal cord, ventral horn
nTPM: 76.1
2068 Male, age 55, unknown 101.2
2098 Female, age 72, unknown 83.6
2809 Male, age 90, both hemispheres 75.0
2820 Female, age 79, both hemispheres 67.4
2295 Male, age 66, both hemispheres 65.6
2480 Male, age 75, both hemispheres 64.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.5
Samples: 204

Max nTPM: 376.8
Min nTPM: 38.1
Std nTPM: 54.9
Median nTPM: 159.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 376.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 326.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 304.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 295.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 284.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 280.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 279.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 275.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 269.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 267.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 260.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 256.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 253.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 248.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 247.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 241.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 240.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 237.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 235.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 234.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 234.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 234.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 232.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 230.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 229.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 226.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 223.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 222.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 221.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 221.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 220.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 220.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 216.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 216.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 215.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 212.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 212.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 211.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 210.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 209.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 208.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 208.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 207.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 203.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 201.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 201.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 199.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 197.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 196.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 196.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 195.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 195.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 194.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 193.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 193.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 192.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 189.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 187.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 187.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 187.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 183.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 183.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 182.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 181.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 181.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 181.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 181.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 180.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 179.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 179.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 178.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 177.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 176.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 175.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 175.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 175.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 174.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 173.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 173.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 172.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 172.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 171.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 171.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 171.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 170.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 169.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 167.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 166.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 166.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 165.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 160.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 160.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 159.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 159.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 159.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 159.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 158.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 158.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 158.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 157.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 157.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 155.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 153.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 153.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 152.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 152.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 151.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 151.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 151.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 150.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 149.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 149.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 149.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 149.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 149.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 147.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 147.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 147.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 145.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 144.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 144.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 143.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 142.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 140.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 140.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 138.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 138.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 137.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 137.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 137.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 137.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 136.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 136.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 135.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 135.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 135.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 133.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 132.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 131.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 131.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 130.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 129.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 125.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 125.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 125.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 121.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 119.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 115.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 115.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 113.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 111.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 110.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 109.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 107.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 107.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 102.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 102.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 101.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 96.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 95.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 94.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 93.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 91.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 91.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 88.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 85.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 84.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 77.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 76.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 73.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 72.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 71.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 61.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 61.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 58.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 56.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 56.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 38.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 302.4
FF:10181-103D1 60 years, female 338.9
FF:10159-103A6 76 years, female 265.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 89.0
Samples: 4

Max nTPM: 105.1
Min nTPM: 65.9
Sample A Female 103.0
Sample B Female 105.1
Sample C Male 65.9
Sample D Male 81.9
Ventral spinal cord
nTPM: 100.9
Samples: 4

Max nTPM: 119.2
Min nTPM: 76.2
Sample A Female 114.3
Sample B Female 93.8
Sample C Male 76.2
Sample D Male 119.2

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