We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HNRNPH2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HNRNPH2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:54.7 nTPM
HPA Brain:46.1 nTPM
GTEx:54.7 nTPM
FANTOM5:130.3 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:94.7 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.1
Sample id Sample description nTPM
Amygdala
nTPM: 46.1
2814 Male, age 76, right hemisphere 52.6
2514 Male, age 75, right hemisphere 50.9
1987 Female, age 91, left hemisphere 44.6
2695 Female, age 67, right hemisphere 43.2
2517 Female, age 94, left hemisphere 39.3
Basal amygdala
nTPM: 41.2
2110 Male, age 80, left hemisphere 46.8
2609 Male, age 75, right hemisphere 45.2
1955 Male, age 76, both hemispheres 43.3
2243 Female, age 91, right hemisphere 42.7
2685 Female, age 94, left hemisphere 36.9
2827 Female, age 67, right hemisphere 31.9
Central amygdala
nTPM: 42.6
1905 Male, age 76, both hemispheres 46.3
2515 Male, age 75, right hemisphere 45.5
2239 Male, age 80, left hemisphere 43.2
2701 Female, age 91, right hemisphere 39.6
2826 Female, age 94, left hemisphere 38.3
Corticomedial amygdala
nTPM: 43.4
2829 Male, age 80, left hemisphere 49.1
2428 Male, age 75, right hemisphere 45.9
2240 Male, age 76, both hemispheres 45.7
2242 Female, age 91, right hemisphere 42.8
2429 Female, age 94, left hemisphere 42.7
2535 Female, age 67, right hemisphere 34.0
Lateral amygdala
nTPM: 38.0
1883 Male, age 76, both hemispheres 47.5
2516 Male, age 75, right hemisphere 46.7
2534 Female, age 94, left hemisphere 36.0
2256 Male, age 80, left hemisphere 34.4
2255 Female, age 91, right hemisphere 32.8
2830 Female, age 67, right hemisphere 30.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.7
Samples: 181

Max nTPM: 91.3
Min nTPM: 28.8
Std nTPM: 10.0
Median nTPM: 53.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 91.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 83.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 82.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 80.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 79.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 77.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 75.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 71.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 70.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 69.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 69.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 68.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 68.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 66.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 66.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 66.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 65.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 64.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 64.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 63.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 63.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 63.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 62.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 62.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 62.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 61.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 61.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 61.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 61.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 60.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 60.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 60.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 60.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 59.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 59.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 59.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 59.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 59.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 58.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 58.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 58.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 57.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 57.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 57.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 57.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 57.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 57.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 57.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 56.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 56.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 56.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 56.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 56.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 55.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 55.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 55.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 55.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 54.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 54.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 54.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 54.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 54.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 54.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 54.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 54.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 54.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 54.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 53.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 53.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 53.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 52.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 51.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 51.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 51.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 51.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 51.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 51.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 50.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 50.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 50.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 50.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 50.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 50.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 50.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 50.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 49.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 49.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 49.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 49.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 49.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 49.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 48.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 48.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 47.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 47.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 47.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 47.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 47.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 47.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 47.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 47.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 47.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 46.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 46.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 46.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 46.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 46.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 46.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 45.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 45.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 45.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 44.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 44.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 44.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 44.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 44.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 43.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 43.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 43.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 42.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 42.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 42.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 42.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 41.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 41.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 39.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 39.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 38.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 38.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 36.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 35.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 35.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 28.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 130.3
FF:10151-102I7 76 years, female 130.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.6
Pig sample Sample description nTPM
Amygdala
nTPM: 13.6
Samples: 4

Max nTPM: 18.2
Min nTPM: 11.5
Sample A Female 18.2
Sample B Female 11.7
Sample C Male 11.5
Sample D Male 13.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 94.7
Samples: 4

Max nTPM: 101.1
Min nTPM: 92.1
Sample A Male 101.1
Sample B Male 93.2
Sample C Female 92.2
Sample D Female 92.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
71724552 Antisense, RP_050927_04_H01, Mouse strain C57BL/6J (56 days, male) 1.2
112649906 Antisense, RP_110421_01_A04, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo