MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:8.8 nTPM
GTEx:8.4 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:25.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
1870 Female, age 42, unknown 8.9
2411 Female, age 72, unknown 8.6
2019 Male, age 18, unknown 8.3
2219 Male, age 76, both hemispheres 8.0
1827 Male, age 72, unknown 7.5
1830 Male, age 51, unknown 6.7
1833 Male, age 53, unknown 6.7
2666 Male, age 74, left hemisphere 6.4
2828 Female, age 72, unknown 6.1
2586 Male, age 75, left hemisphere 5.8
Dorsal raphe nucleus
nTPM: 7.6
2016 Female, age 72, unknown 8.4
2750 Male, age 76, both hemispheres 8.3
2298 Female, age 72, unknown 8.2
2047 Male, age 72, unknown 6.8
1828 Male, age 53, unknown 6.5
Inferior colliculus
nTPM: 8.8
2097 Female, age 72, unknown 9.6
2849 Male, age 72, unknown 8.7
1890 Male, age 53, unknown 8.4
1848 Female, age 42, unknown 8.3
Median raphe nucleus
nTPM: 7.4
2220 Male, age 76, midline 7.4
Periaquaductal grey, anterior
nTPM: 7.5
2502 Female, age 75, unknown 7.9
1947 Male, age 18, unknown 7.5
1795 Male, age 51, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 8.4
1840 Male, age 53, unknown 9.3
2850 Male, age 76, both hemispheres 8.5
1831 Male, age 72, unknown 8.2
2464 Female, age 72, unknown 7.8
Periaquaductal grey, lateral
nTPM: 8.8
2272 Male, age 74, both hemispheres 10.7
2053 Male, age 18, unknown 8.6
2140 Male, age 76, both hemispheres 7.3
Pretectal area
nTPM: 8.2
2273 Male, age 74, both hemispheres 9.8
2007 Male, age 72, unknown 9.3
1816 Male, age 51, unknown 8.8
2667 Female, age 75, unknown 8.8
1817 Female, age 42, unknown 8.6
1815 Male, age 53, unknown 8.5
2224 Female, age 72, unknown 8.4
1944 Female, age 72, unknown 8.2
2316 Male, age 76, right hemisphere 8.2
2825 Male, age 18, unknown 6.7
2407 Male, age 75, both hemispheres 5.2
Red nucleus
nTPM: 7.7
1821 Female, age 72, unknown 10.2
2823 Male, age 76, right hemisphere 9.2
2785 Male, age 18, unknown 8.8
1865 Male, age 51, unknown 8.1
1954 Female, age 42, unknown 8.0
2588 Male, age 74, left hemisphere 7.9
1904 Male, age 53, unknown 7.8
2503 Female, age 72, unknown 7.7
2227 Male, age 72, unknown 7.1
2769 Male, age 72, unknown 6.9
2725 Female, age 75, unknown 6.1
2584 Male, age 75, left hemisphere 4.8
Substantia nigra
nTPM: 6.9
2590 Female, age 75, unknown 8.7
1889 Female, age 72, unknown 8.4
1941 Male, age 53, unknown 8.0
2241 Male, age 72, unknown 7.5
2409 Female, age 72, unknown 7.5
2583 Male, age 75, right hemisphere 6.4
1851 Male, age 51, unknown 6.3
1916 Female, age 42, unknown 6.1
2699 Male, age 18, unknown 6.1
2665 Male, age 74, both hemispheres 4.2
Superior colliculus
nTPM: 7.8
2587 Male, age 74, left hemisphere 9.9
1913 Female, age 42, unknown 9.4
1895 Male, age 76, right hemisphere 9.2
1995 Male, age 72, unknown 8.0
2261 Male, age 18, unknown 8.0
1839 Male, age 51, unknown 7.7
1796 Male, age 53, unknown 7.5
2087 Female, age 72, unknown 6.8
2668 Female, age 75, unknown 6.6
2664 Male, age 75, both hemispheres 5.4
Ventral tegmental area
nTPM: 7.3
2410 Female, age 72, unknown 8.4
1942 Male, age 51, unknown 7.9
2021 Male, age 53, unknown 7.0
2223 Female, age 72, unknown 7.0
2218 Male, age 76, both hemispheres 6.9
1915 Female, age 42, unknown 6.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 183

Max nTPM: 16.5
Min nTPM: 3.8
Std nTPM: 2.0
Median nTPM: 8.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 16.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 15.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 12.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 12.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 12.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 12.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 11.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 10.4
Sample A Female 17.3
Sample B Female 10.4
Sample C Male 14.3
Sample D Male 10.7
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.4
Sample A Female 14.3
Sample B Female 11.4
Sample C Male 15.3
Sample D Male 14.2
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 12.6
Min nTPM: 9.1
Sample B Female 9.1
Sample C Male 12.6
Sample D Male 11.2
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 14.9
Min nTPM: 6.9
Sample A Female 14.6
Sample B Female 6.9
Sample C Male 14.9
Sample D Male 13.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.2
Sample A Male 26.7
Sample B Male 26.9
Sample C Female 23.2
Sample D Female 26.7

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