HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:68.5 nTPM
GTEx:23.9 nTPM
FANTOM5:49.1 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:23.3 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019237Antibody HPA055309
Glial cells Not detectedNot detected
Neuronal cells HighMedium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.5
Sample id Sample description nTPM
Hippocampus
nTPM: 66.3
2148 Female, age 91, left hemisphere 85.2
2529 Female, age 94, left hemisphere 69.7
1855 Male, age 76, left hemisphere 69.4
2621 Female, age 67, right hemisphere 62.9
1911 Female, age 85, right hemisphere 56.1
1898 Male, age 80, left hemisphere 54.7
Dentate gyrus
nTPM: 66.4
2531 Female, age 67, both hemispheres 82.6
1927 Female, age 91, both hemispheres 69.4
2528 Male, age 74, both hemispheres 67.8
2246 Female, age 85, both hemispheres 65.8
2010 Male, age 76, both hemispheres 58.2
2530 Female, age 94, left hemisphere 54.4
Entorhinal gyrus
nTPM: 54.6
2686 Male, age 75, right hemisphere 63.3
2764 Male, age 80, right hemisphere 61.3
2613 Female, age 94, left hemisphere 55.3
1787 Male, age 76, left hemisphere 53.3
1938 Female, age 85, left hemisphere 49.6
2117 Female, age 91, right hemisphere 44.9
Hippocampus, CA1
nTPM: 68.5
2045 Male, age 76, both hemispheres 78.0
1873 Female, age 85, both hemispheres 68.2
2749 Male, age 80, left hemisphere 66.7
2082 Female, age 91, right hemisphere 65.7
2527 Male, age 74, both hemispheres 63.7
Hippocampus, CA2
nTPM: 54.8
1963 Male, age 80, left hemisphere 64.6
2249 Male, age 74, both hemispheres 56.3
1892 Male, age 76, both hemispheres 56.2
2113 Female, age 91, right hemisphere 55.5
2437 Female, age 94, left hemisphere 51.1
1940 Female, age 85, left hemisphere 44.8
Hippocampus, CA3
nTPM: 67.3
2620 Female, age 94, left hemisphere 97.4
2861 Female, age 67, both hemispheres 78.9
2137 Male, age 80, left hemisphere 65.6
1891 Female, age 85, both hemispheres 57.2
2436 Male, age 74, both hemispheres 53.7
1867 Male, age 76, both hemispheres 50.8
Parahippocampal cortex
nTPM: 55.6
2692 Male, age 74, both hemispheres 73.8
2622 Female, age 67, right hemisphere 66.7
2018 Male, age 76, both hemispheres 56.6
2532 Female, age 72, left hemisphere 56.6
2245 Female, age 91, both hemispheres 53.5
1990 Female, age 91, right hemisphere 52.2
1850 Male, age 80, both hemispheres 50.5
1933 Female, age 85, both hemispheres 49.9
2693 Female, age 94, both hemispheres 49.8
2250 Female, age 67, right hemisphere 46.8
Perirhinal gyrus
nTPM: 50.1
1847 Female, age 91, left hemisphere 56.2
1794 Male, age 80, right hemisphere 53.5
2848 Male, age 76, right hemisphere 49.2
2521 Female, age 94, right hemisphere 47.8
1841 Female, age 85, right hemisphere 43.9
Subiculum
nTPM: 60.0
2729 Female, age 91, right hemisphere 75.4
2619 Male, age 74, both hemispheres 69.5
2438 Female, age 94, left hemisphere 68.1
1977 Female, age 85, both hemispheres 52.8
2042 Male, age 76, both hemispheres 48.5
1901 Male, age 80, both hemispheres 45.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 23.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.9
Samples: 255

Max nTPM: 63.2
Min nTPM: 11.1
Std nTPM: 7.9
Median nTPM: 22.8
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 63.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 55.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 46.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 46.4
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 46.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 45.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 44.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 44.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 40.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 39.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 38.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.1
FF:10153-102I9 76 years, female 53.6
FF:10169-103B7 60 years, female 44.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 42.1
Pig sample Sample description nTPM
Subiculum
nTPM: 38.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 33.5
Sample A Female 47.1
Sample B Female 35.7
Sample C Male 35.8
Sample D Male 33.5
Dorsal hippocampus
nTPM: 38.9
Samples: 4

Max nTPM: 45.0
Min nTPM: 34.5
Sample A Female 45.0
Sample B Female 40.2
Sample C Male 34.5
Sample D Male 35.9
Entorhinal cortex
nTPM: 42.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 38.7
Sample A Female 49.0
Sample B Female 41.6
Sample C Male 38.7
Sample D Male 39.0
Ventral hippocampus
nTPM: 39.0
Samples: 4

Max nTPM: 43.7
Min nTPM: 32.8
Sample A Female 39.7
Sample B Female 32.8
Sample C Male 43.7
Sample D Male 39.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 23.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.2
Samples: 4

Max nTPM: 24.1
Min nTPM: 22.4
Sample A Male 23.5
Sample B Male 24.1
Sample C Female 22.6
Sample D Female 22.4
Hippocampal formation
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 21.6
Sample A Male 23.2
Sample B Male 25.1
Sample C Female 21.6
Sample D Female 23.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
2193 Antisense, RP_040526_01_A04, Mouse strain C57BL/6J (56 days, male) 1.0
2194 Antisense, RP_040526_01_A04, Mouse strain C57BL/6J (56 days, male) 0.6

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