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  • UQCR11
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.8 nTPM
HPA Brain:51.0 nTPM
GTEx:132.8 nTPM
FANTOM5:222.4 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:731.4 nTPM
Allen mouse:17.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.0
Sample id Sample description nTPM
Amygdala
nTPM: 51.0
2814 Male, age 76, right hemisphere 53.9
2517 Female, age 94, left hemisphere 53.4
2695 Female, age 67, right hemisphere 49.8
2514 Male, age 75, right hemisphere 49.7
1987 Female, age 91, left hemisphere 48.5
Basal amygdala
nTPM: 46.9
2243 Female, age 91, right hemisphere 51.7
2609 Male, age 75, right hemisphere 50.2
2685 Female, age 94, left hemisphere 47.8
2110 Male, age 80, left hemisphere 46.4
1955 Male, age 76, both hemispheres 44.7
2827 Female, age 67, right hemisphere 40.9
Central amygdala
nTPM: 49.5
2826 Female, age 94, left hemisphere 59.2
1905 Male, age 76, both hemispheres 55.5
2515 Male, age 75, right hemisphere 48.2
2239 Male, age 80, left hemisphere 42.9
2701 Female, age 91, right hemisphere 41.8
Corticomedial amygdala
nTPM: 48.2
2428 Male, age 75, right hemisphere 52.2
2429 Female, age 94, left hemisphere 51.8
2829 Male, age 80, left hemisphere 50.8
2240 Male, age 76, both hemispheres 45.6
2535 Female, age 67, right hemisphere 45.5
2242 Female, age 91, right hemisphere 43.3
Lateral amygdala
nTPM: 49.3
2516 Male, age 75, right hemisphere 58.2
2534 Female, age 94, left hemisphere 57.2
2830 Female, age 67, right hemisphere 49.5
1883 Male, age 76, both hemispheres 46.0
2255 Female, age 91, right hemisphere 42.9
2256 Male, age 80, left hemisphere 42.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.8
Samples: 181

Max nTPM: 458.1
Min nTPM: 46.0
Std nTPM: 53.0
Median nTPM: 120.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 458.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 369.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 311.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 276.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 275.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 262.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 252.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 227.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 225.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 214.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 208.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 208.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 200.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 200.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 197.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 194.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 193.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 191.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 189.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 189.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 188.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 183.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 182.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 178.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 178.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 174.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 173.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 171.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 170.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 169.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 168.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 167.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 164.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 164.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 164.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 163.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 162.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 161.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 161.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 160.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 158.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 157.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 156.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 153.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 153.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 153.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 152.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 151.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 151.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 149.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 147.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 145.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 144.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 144.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 143.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 143.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 142.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 142.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 140.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 139.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 139.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 135.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 134.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 133.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 133.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 131.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 131.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 131.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 128.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 128.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 124.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 123.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 123.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 123.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 123.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 123.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 123.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 121.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 121.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 121.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 120.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 120.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 120.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 120.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 120.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 119.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 119.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 118.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 118.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 117.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 117.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 116.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 115.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 115.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 115.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 113.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 113.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 113.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 112.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 111.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 109.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 109.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 108.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 107.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 106.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 106.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 104.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 104.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 102.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 100.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 99.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 98.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 96.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 95.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 94.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 93.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 92.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 92.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 89.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 89.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 87.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 86.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 86.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 85.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 83.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 82.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 81.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 81.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 79.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 78.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 75.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 72.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 63.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 222.4
FF:10151-102I7 76 years, female 222.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.2
Pig sample Sample description nTPM
Amygdala
nTPM: 22.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 22.7
Sample C Male 23.0
Sample D Male 22.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

731.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 731.4
Samples: 4

Max nTPM: 863.5
Min nTPM: 642.0
Sample A Male 642.0
Sample B Male 672.6
Sample C Female 863.5
Sample D Female 747.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.6
67870133 Antisense, RP_041018_01_C12, Mouse strain C57BL/6J (56 days, male) 17.6
68203447 Antisense, RP_041018_01_C12, Mouse strain C57BL/6J (56 days, male) 14.9

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