HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:38.3 nTPM
GTEx:10.4 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:35.6 nTPM
Allen mouse:12.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 38.3
Sample id Sample description nTPM
Hippocampus
nTPM: 36.1
2148 Female, age 91, left hemisphere 40.3
1911 Female, age 85, right hemisphere 38.3
1855 Male, age 76, left hemisphere 37.0
2621 Female, age 67, right hemisphere 36.2
1898 Male, age 80, left hemisphere 32.4
2529 Female, age 94, left hemisphere 32.1
Dentate gyrus
nTPM: 37.6
2531 Female, age 67, both hemispheres 42.7
2530 Female, age 94, left hemisphere 37.4
1927 Female, age 91, both hemispheres 37.2
2010 Male, age 76, both hemispheres 36.7
2528 Male, age 74, both hemispheres 35.8
2246 Female, age 85, both hemispheres 35.5
Entorhinal gyrus
nTPM: 33.4
2764 Male, age 80, right hemisphere 36.6
2686 Male, age 75, right hemisphere 36.2
2613 Female, age 94, left hemisphere 35.2
1787 Male, age 76, left hemisphere 31.3
2117 Female, age 91, right hemisphere 31.2
1938 Female, age 85, left hemisphere 29.8
Hippocampus, CA1
nTPM: 38.3
2749 Male, age 80, left hemisphere 41.5
2045 Male, age 76, both hemispheres 40.1
2082 Female, age 91, right hemisphere 38.2
1873 Female, age 85, both hemispheres 36.7
2527 Male, age 74, both hemispheres 35.2
Hippocampus, CA2
nTPM: 34.2
2113 Female, age 91, right hemisphere 38.7
2437 Female, age 94, left hemisphere 35.4
1963 Male, age 80, left hemisphere 35.0
2249 Male, age 74, both hemispheres 34.0
1940 Female, age 85, left hemisphere 31.8
1892 Male, age 76, both hemispheres 30.0
Hippocampus, CA3
nTPM: 37.2
2137 Male, age 80, left hemisphere 44.1
2620 Female, age 94, left hemisphere 43.5
2861 Female, age 67, both hemispheres 42.4
2436 Male, age 74, both hemispheres 32.1
1891 Female, age 85, both hemispheres 31.4
1867 Male, age 76, both hemispheres 29.7
Parahippocampal cortex
nTPM: 33.6
2622 Female, age 67, right hemisphere 38.0
2018 Male, age 76, both hemispheres 37.9
2693 Female, age 94, both hemispheres 35.5
1990 Female, age 91, right hemisphere 33.9
2245 Female, age 91, both hemispheres 33.9
2250 Female, age 67, right hemisphere 33.0
2692 Male, age 74, both hemispheres 32.6
2532 Female, age 72, left hemisphere 32.2
1933 Female, age 85, both hemispheres 31.6
1850 Male, age 80, both hemispheres 27.8
Perirhinal gyrus
nTPM: 29.4
2521 Female, age 94, right hemisphere 31.4
1794 Male, age 80, right hemisphere 30.2
1841 Female, age 85, right hemisphere 29.2
1847 Female, age 91, left hemisphere 28.3
2848 Male, age 76, right hemisphere 27.7
Subiculum
nTPM: 33.2
2729 Female, age 91, right hemisphere 37.8
1901 Male, age 80, both hemispheres 34.4
2042 Male, age 76, both hemispheres 33.4
2619 Male, age 74, both hemispheres 33.1
1977 Female, age 85, both hemispheres 30.8
2438 Female, age 94, left hemisphere 29.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 255

Max nTPM: 17.6
Min nTPM: 4.7
Std nTPM: 2.3
Median nTPM: 10.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 17.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 17.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 17.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 16.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 15.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 15.3
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 15.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 14.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 14.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 14.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.1
FF:10169-103B7 60 years, female 72.7
FF:10153-102I9 76 years, female 61.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.3
Pig sample Sample description nTPM
Subiculum
nTPM: 18.7
Samples: 4

Max nTPM: 22.1
Min nTPM: 15.8
Sample A Female 22.1
Sample B Female 18.1
Sample C Male 18.8
Sample D Male 15.8
Dorsal hippocampus
nTPM: 22.3
Samples: 4

Max nTPM: 26.3
Min nTPM: 17.8
Sample A Female 26.3
Sample B Female 24.6
Sample C Male 20.6
Sample D Male 17.8
Entorhinal cortex
nTPM: 18.9
Samples: 4

Max nTPM: 19.9
Min nTPM: 17.4
Sample A Female 19.8
Sample B Female 18.4
Sample C Male 19.9
Sample D Male 17.4
Ventral hippocampus
nTPM: 20.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.5
Sample A Female 19.5
Sample B Female 16.5
Sample C Male 24.4
Sample D Male 21.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 35.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 23.6
Sample A Male 26.6
Sample B Male 23.6
Sample C Female 27.2
Sample D Female 27.2
Hippocampal formation
nTPM: 35.6
Samples: 4

Max nTPM: 45.4
Min nTPM: 28.3
Sample A Male 28.3
Sample B Male 35.1
Sample C Female 45.4
Sample D Female 33.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 12.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.2
2331 Antisense, RP_040407_02_A09, Mouse strain C57BL/6J (56 days, male) 12.2
2332 Antisense, RP_040407_02_A09, Mouse strain C57BL/6J (56 days, male) 9.6

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