MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.7 nTPM
HPA Brain:52.7 nTPM
GTEx:57.7 nTPM
FANTOM5:90.2 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:131.8 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.7
2586 Male, age 75, left hemisphere 53.6
2411 Female, age 72, unknown 53.0
1827 Male, age 72, unknown 49.7
1870 Female, age 42, unknown 48.2
2828 Female, age 72, unknown 47.8
2019 Male, age 18, unknown 42.1
2666 Male, age 74, left hemisphere 41.2
1833 Male, age 53, unknown 39.6
1830 Male, age 51, unknown 38.6
2219 Male, age 76, both hemispheres 33.1
Dorsal raphe nucleus
nTPM: 48.0
2298 Female, age 72, unknown 63.0
2047 Male, age 72, unknown 48.3
1828 Male, age 53, unknown 44.9
2016 Female, age 72, unknown 42.8
2750 Male, age 76, both hemispheres 40.8
Inferior colliculus
nTPM: 43.6
2097 Female, age 72, unknown 50.2
1890 Male, age 53, unknown 43.1
1848 Female, age 42, unknown 43.0
2849 Male, age 72, unknown 38.0
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Periaquaductal grey, anterior
nTPM: 52.7
2502 Female, age 75, unknown 57.7
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 42.3
1840 Male, age 53, unknown 48.2
2850 Male, age 76, both hemispheres 43.9
2464 Female, age 72, unknown 38.8
1831 Male, age 72, unknown 38.2
Periaquaductal grey, lateral
nTPM: 44.3
2140 Male, age 76, both hemispheres 45.5
2053 Male, age 18, unknown 45.1
2272 Male, age 74, both hemispheres 42.3
Pretectal area
nTPM: 47.1
2273 Male, age 74, both hemispheres 54.5
1816 Male, age 51, unknown 50.5
2007 Male, age 72, unknown 50.1
2667 Female, age 75, unknown 49.2
1817 Female, age 42, unknown 49.1
2224 Female, age 72, unknown 46.4
2825 Male, age 18, unknown 45.5
1944 Female, age 72, unknown 45.1
2316 Male, age 76, right hemisphere 45.1
1815 Male, age 53, unknown 44.5
2407 Male, age 75, both hemispheres 37.9
Red nucleus
nTPM: 43.9
1821 Female, age 72, unknown 50.7
1904 Male, age 53, unknown 47.2
2227 Male, age 72, unknown 46.0
2725 Female, age 75, unknown 45.7
1865 Male, age 51, unknown 45.3
2785 Male, age 18, unknown 44.6
1954 Female, age 42, unknown 43.9
2769 Male, age 72, unknown 43.7
2503 Female, age 72, unknown 43.5
2823 Male, age 76, right hemisphere 40.2
2588 Male, age 74, left hemisphere 39.6
2584 Male, age 75, left hemisphere 36.5
Substantia nigra
nTPM: 48.5
1916 Female, age 42, unknown 60.8
1851 Male, age 51, unknown 55.6
2241 Male, age 72, unknown 50.9
1889 Female, age 72, unknown 49.9
1941 Male, age 53, unknown 48.7
2699 Male, age 18, unknown 45.6
2665 Male, age 74, both hemispheres 44.7
2409 Female, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 42.6
2590 Female, age 75, unknown 42.2
Superior colliculus
nTPM: 43.8
1796 Male, age 53, unknown 49.7
2261 Male, age 18, unknown 48.4
2587 Male, age 74, left hemisphere 47.0
2087 Female, age 72, unknown 43.9
1895 Male, age 76, right hemisphere 42.4
1913 Female, age 42, unknown 41.9
2664 Male, age 75, both hemispheres 41.8
2668 Female, age 75, unknown 41.4
1839 Male, age 51, unknown 40.7
1995 Male, age 72, unknown 40.5
Ventral tegmental area
nTPM: 47.0
2410 Female, age 72, unknown 54.7
1915 Female, age 42, unknown 51.7
1942 Male, age 51, unknown 48.7
2223 Female, age 72, unknown 43.3
2218 Male, age 76, both hemispheres 42.4
2021 Male, age 53, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 183

Max nTPM: 100.2
Min nTPM: 35.0
Std nTPM: 10.8
Median nTPM: 56.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 100.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 90.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 85.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 83.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 83.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 82.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 79.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 79.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 90.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.2
FF:10158-103A5 76 years, female 90.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 25.0
Sample A Female 34.6
Sample B Female 25.0
Sample C Male 31.4
Sample D Male 26.1
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 40.0
Min nTPM: 27.2
Sample A Female 40.0
Sample B Female 27.2
Sample C Male 28.7
Sample D Male 27.5
Periaqueductal gray
nTPM: 26.0
Samples: 3

Max nTPM: 29.9
Min nTPM: 23.0
Sample B Female 25.1
Sample C Male 29.9
Sample D Male 23.0
Superior colliculi
nTPM: 31.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 28.2
Sample A Female 35.3
Sample B Female 28.2
Sample C Male 31.0
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 131.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.8
Samples: 4

Max nTPM: 144.8
Min nTPM: 123.6
Sample A Male 144.8
Sample B Male 123.6
Sample C Female 125.3
Sample D Female 133.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
67792196 Antisense, RP_040920_01_D02, Mouse strain C57BL/6J (56 days, male) 4.4

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