MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.6 nTPM
HPA Brain:70.9 nTPM
GTEx:100.6 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:190.0 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.1
2019 Male, age 18, unknown 86.1
2586 Male, age 75, left hemisphere 77.7
1833 Male, age 53, unknown 60.8
1827 Male, age 72, unknown 60.6
2411 Female, age 72, unknown 58.4
2828 Female, age 72, unknown 58.0
1870 Female, age 42, unknown 54.8
1830 Male, age 51, unknown 54.7
2219 Male, age 76, both hemispheres 47.8
2666 Male, age 74, left hemisphere 42.2
Dorsal raphe nucleus
nTPM: 60.8
2298 Female, age 72, unknown 70.1
1828 Male, age 53, unknown 66.0
2047 Male, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 55.0
2016 Female, age 72, unknown 52.3
Inferior colliculus
nTPM: 70.9
2097 Female, age 72, unknown 74.5
1848 Female, age 42, unknown 71.5
1890 Male, age 53, unknown 71.0
2849 Male, age 72, unknown 66.5
Median raphe nucleus
nTPM: 55.5
2220 Male, age 76, midline 55.5
Periaquaductal grey, anterior
nTPM: 48.7
2502 Female, age 75, unknown 57.3
1795 Male, age 51, unknown 45.4
1947 Male, age 18, unknown 43.5
Periaquaductal grey, dorsal
nTPM: 48.2
2464 Female, age 72, unknown 52.2
2850 Male, age 76, both hemispheres 48.9
1840 Male, age 53, unknown 48.7
1831 Male, age 72, unknown 43.1
Periaquaductal grey, lateral
nTPM: 45.9
2272 Male, age 74, both hemispheres 51.4
2053 Male, age 18, unknown 43.2
2140 Male, age 76, both hemispheres 43.1
Pretectal area
nTPM: 63.9
2007 Male, age 72, unknown 88.9
1817 Female, age 42, unknown 83.5
1944 Female, age 72, unknown 77.9
2667 Female, age 75, unknown 71.2
1816 Male, age 51, unknown 69.3
1815 Male, age 53, unknown 62.8
2407 Male, age 75, both hemispheres 62.5
2273 Male, age 74, both hemispheres 53.9
2224 Female, age 72, unknown 46.5
2825 Male, age 18, unknown 45.2
2316 Male, age 76, right hemisphere 41.7
Red nucleus
nTPM: 59.4
2785 Male, age 18, unknown 78.7
1821 Female, age 72, unknown 72.3
2769 Male, age 72, unknown 63.0
2227 Male, age 72, unknown 60.2
2588 Male, age 74, left hemisphere 57.6
1865 Male, age 51, unknown 56.2
1954 Female, age 42, unknown 56.0
2503 Female, age 72, unknown 55.7
1904 Male, age 53, unknown 54.8
2725 Female, age 75, unknown 53.5
2823 Male, age 76, right hemisphere 52.5
2584 Male, age 75, left hemisphere 52.4
Substantia nigra
nTPM: 64.5
1916 Female, age 42, unknown 77.3
1889 Female, age 72, unknown 76.9
1941 Male, age 53, unknown 76.9
1851 Male, age 51, unknown 69.1
2665 Male, age 74, both hemispheres 68.9
2699 Male, age 18, unknown 61.8
2583 Male, age 75, right hemisphere 60.3
2241 Male, age 72, unknown 54.1
2409 Female, age 72, unknown 53.7
2590 Female, age 75, unknown 45.7
Superior colliculus
nTPM: 58.3
2087 Female, age 72, unknown 69.5
2668 Female, age 75, unknown 65.5
1895 Male, age 76, right hemisphere 64.7
1839 Male, age 51, unknown 59.7
2664 Male, age 75, both hemispheres 59.4
1796 Male, age 53, unknown 56.8
2587 Male, age 74, left hemisphere 56.7
1913 Female, age 42, unknown 51.3
1995 Male, age 72, unknown 50.4
2261 Male, age 18, unknown 49.3
Ventral tegmental area
nTPM: 53.8
2410 Female, age 72, unknown 68.5
1915 Female, age 42, unknown 66.1
2218 Male, age 76, both hemispheres 51.9
1942 Male, age 51, unknown 51.0
2223 Female, age 72, unknown 44.1
2021 Male, age 53, unknown 41.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 183

Max nTPM: 320.8
Min nTPM: 39.7
Std nTPM: 32.4
Median nTPM: 93.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 320.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 246.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 189.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 186.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 186.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 163.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 163.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 159.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 158.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 156.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 154.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.3
FF:10158-103A5 76 years, female 60.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.0
Sample A Female 19.3
Sample B Female 14.0
Sample C Male 21.2
Sample D Male 17.8
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 33.6
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 18.9
Sample C Male 33.6
Sample D Male 30.1
Periaqueductal gray
nTPM: 20.8
Samples: 3

Max nTPM: 22.5
Min nTPM: 19.7
Sample B Female 20.1
Sample C Male 22.5
Sample D Male 19.7
Superior colliculi
nTPM: 34.9
Samples: 4

Max nTPM: 47.5
Min nTPM: 20.2
Sample A Female 35.3
Sample B Female 20.2
Sample C Male 47.5
Sample D Male 36.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 190.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 190.0
Samples: 4

Max nTPM: 195.9
Min nTPM: 184.1
Sample A Male 187.0
Sample B Male 184.1
Sample C Female 195.9
Sample D Female 192.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
69262253 Antisense, RP_050301_02_A01, Mouse strain C57BL/6J (56 days, male) 9.9
73769326 Antisense, RP_051121_04_B11, Mouse strain C57BL/6J (56 days, male) 9.6

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