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  • SEM1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:197.9 nTPM
HPA Brain:52.1 nTPM
GTEx:197.9 nTPM
FANTOM5:174.5 Scaled Tags Per Million
Pig:76.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 48.8
2816 Male, age 47, midline 52.3
2194 Female, age 79, both hemispheres 52.1
1981 Female, age 72, midline 51.4
2048 Male, age 55, midline 46.1
2565 Male, age 75, midline 42.3
Cervical spinal cord, dorsal horn
nTPM: 45.9
2173 Female, age 72, unknown 54.3
1877 Male, age 55, unknown 51.5
2296 Male, age 66, both hemispheres 51.1
2297 Male, age 75, both hemispheres 39.9
2069 Male, age 47, both hemispheres 39.8
2721 Male, age 90, both hemispheres 38.6
Cervical spinal cord, ventral horn
nTPM: 52.1
2809 Male, age 90, both hemispheres 56.7
2480 Male, age 75, both hemispheres 56.4
2098 Female, age 72, unknown 53.7
2820 Female, age 79, both hemispheres 51.8
2068 Male, age 55, unknown 51.5
2295 Male, age 66, both hemispheres 42.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 197.9
Samples: 204

Max nTPM: 327.2
Min nTPM: 68.9
Std nTPM: 44.2
Median nTPM: 196.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 327.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 317.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 311.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 306.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 303.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 297.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 293.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 292.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 287.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 286.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 285.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 276.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 272.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 271.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 262.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 261.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 261.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 260.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 260.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 252.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 251.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 251.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 250.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 248.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 248.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 248.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 245.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 245.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 243.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 243.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 243.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 241.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 241.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 241.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 240.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 239.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 237.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 237.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 234.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 233.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 230.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 229.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 228.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 226.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 225.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 225.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 225.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 224.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 224.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 224.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 223.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 222.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 221.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 219.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 218.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 218.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 218.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 217.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 217.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 217.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 217.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 216.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 216.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 213.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 213.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 213.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 213.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 212.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 212.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 211.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 211.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 210.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 210.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 210.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 209.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 208.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 208.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 207.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 206.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 206.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 206.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 205.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 205.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 204.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 204.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 203.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 203.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 203.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 203.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 202.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 201.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 201.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 200.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 199.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 199.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 198.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 198.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 197.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 197.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 197.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 196.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 195.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 195.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 195.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 195.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 194.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 194.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 193.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 193.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 192.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 191.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 186.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 185.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 185.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 182.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 182.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 182.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 182.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 182.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 181.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 181.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 181.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 180.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 179.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 179.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 178.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 178.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 177.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 177.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 177.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 177.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 176.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 176.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 176.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 173.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 173.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 173.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 173.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 172.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 172.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 172.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 171.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 170.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 169.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 167.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 167.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 167.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 166.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 166.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 166.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 165.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 165.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 165.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 164.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 164.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 164.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 164.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 163.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 161.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 161.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 159.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 158.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 156.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 155.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 153.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 153.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 153.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 153.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 152.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 152.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 150.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 148.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 147.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 147.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 146.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 145.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 143.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 142.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 140.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 139.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 136.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 130.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 128.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 118.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 115.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 89.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 77.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 68.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

174.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 174.5
FF:10181-103D1 60 years, female 212.0
FF:10159-103A6 76 years, female 137.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 74.1
Samples: 4

Max nTPM: 88.0
Min nTPM: 57.3
Sample A Female 66.2
Sample B Female 88.0
Sample C Male 84.8
Sample D Male 57.3
Ventral spinal cord
nTPM: 76.5
Samples: 4

Max nTPM: 81.2
Min nTPM: 66.8
Sample A Female 77.8
Sample B Female 66.8
Sample C Male 81.2
Sample D Male 80.1

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