MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA Brain:40.9 nTPM
GTEx:59.0 nTPM
FANTOM5:12.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
2586 Male, age 75, left hemisphere 58.3
2411 Female, age 72, unknown 40.8
2828 Female, age 72, unknown 39.1
1827 Male, age 72, unknown 38.5
2019 Male, age 18, unknown 37.2
2666 Male, age 74, left hemisphere 37.0
1870 Female, age 42, unknown 34.8
1833 Male, age 53, unknown 32.9
2219 Male, age 76, both hemispheres 32.4
1830 Male, age 51, unknown 32.0
Dorsal raphe nucleus
nTPM: 38.0
2298 Female, age 72, unknown 41.2
2047 Male, age 72, unknown 40.2
1828 Male, age 53, unknown 38.1
2750 Male, age 76, both hemispheres 35.7
2016 Female, age 72, unknown 34.9
Inferior colliculus
nTPM: 35.7
1890 Male, age 53, unknown 37.6
2097 Female, age 72, unknown 36.9
2849 Male, age 72, unknown 34.5
1848 Female, age 42, unknown 33.9
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Periaquaductal grey, anterior
nTPM: 40.9
2502 Female, age 75, unknown 43.7
1795 Male, age 51, unknown 42.0
1947 Male, age 18, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 33.7
1840 Male, age 53, unknown 36.5
1831 Male, age 72, unknown 36.0
2464 Female, age 72, unknown 33.0
2850 Male, age 76, both hemispheres 29.3
Periaquaductal grey, lateral
nTPM: 31.6
2053 Male, age 18, unknown 35.7
2140 Male, age 76, both hemispheres 29.6
2272 Male, age 74, both hemispheres 29.3
Pretectal area
nTPM: 38.1
2007 Male, age 72, unknown 48.3
1816 Male, age 51, unknown 45.9
1944 Female, age 72, unknown 42.8
1817 Female, age 42, unknown 42.3
1815 Male, age 53, unknown 38.5
2825 Male, age 18, unknown 38.0
2667 Female, age 75, unknown 35.5
2407 Male, age 75, both hemispheres 34.6
2224 Female, age 72, unknown 33.3
2316 Male, age 76, right hemisphere 32.3
2273 Male, age 74, both hemispheres 27.8
Red nucleus
nTPM: 36.7
2588 Male, age 74, left hemisphere 44.2
2584 Male, age 75, left hemisphere 42.7
2503 Female, age 72, unknown 41.0
2769 Male, age 72, unknown 38.0
2785 Male, age 18, unknown 37.4
2227 Male, age 72, unknown 37.1
1821 Female, age 72, unknown 36.3
2725 Female, age 75, unknown 36.0
1904 Male, age 53, unknown 34.3
1954 Female, age 42, unknown 34.2
1865 Male, age 51, unknown 31.5
2823 Male, age 76, right hemisphere 27.2
Substantia nigra
nTPM: 40.0
2665 Male, age 74, both hemispheres 49.7
2583 Male, age 75, right hemisphere 46.9
1916 Female, age 42, unknown 46.1
1851 Male, age 51, unknown 42.2
1941 Male, age 53, unknown 41.3
1889 Female, age 72, unknown 38.4
2409 Female, age 72, unknown 37.2
2590 Female, age 75, unknown 35.4
2699 Male, age 18, unknown 34.2
2241 Male, age 72, unknown 28.5
Superior colliculus
nTPM: 39.0
2664 Male, age 75, both hemispheres 55.2
2668 Female, age 75, unknown 43.0
2261 Male, age 18, unknown 42.1
2087 Female, age 72, unknown 40.3
1796 Male, age 53, unknown 40.2
1839 Male, age 51, unknown 36.0
1995 Male, age 72, unknown 34.7
2587 Male, age 74, left hemisphere 34.7
1913 Female, age 42, unknown 33.8
1895 Male, age 76, right hemisphere 30.0
Ventral tegmental area
nTPM: 40.0
1942 Male, age 51, unknown 43.2
1915 Female, age 42, unknown 43.1
2410 Female, age 72, unknown 41.7
2021 Male, age 53, unknown 38.0
2218 Male, age 76, both hemispheres 37.5
2223 Female, age 72, unknown 36.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.0
Samples: 183

Max nTPM: 109.2
Min nTPM: 24.4
Std nTPM: 15.9
Median nTPM: 58.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 109.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 105.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 100.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 96.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 94.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 91.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 88.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 87.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 87.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 85.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

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