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  • ASPHD2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4.9 nTPM
HPA Brain:12.3 nTPM
GTEx:4.9 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:12.0 nTPM
Mouse:86.2 nTPM
Allen mouse:9.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.3
Sample id Sample description nTPM
Amygdala
nTPM: 7.2
1987 Female, age 91, left hemisphere 9.3
2517 Female, age 94, left hemisphere 8.9
2814 Male, age 76, right hemisphere 6.5
2695 Female, age 67, right hemisphere 5.8
2514 Male, age 75, right hemisphere 5.4
Basal amygdala
nTPM: 12.3
2110 Male, age 80, left hemisphere 15.5
2685 Female, age 94, left hemisphere 15.4
2243 Female, age 91, right hemisphere 14.5
1955 Male, age 76, both hemispheres 10.5
2827 Female, age 67, right hemisphere 10.1
2609 Male, age 75, right hemisphere 7.4
Central amygdala
nTPM: 9.3
2239 Male, age 80, left hemisphere 11.8
2701 Female, age 91, right hemisphere 11.3
2826 Female, age 94, left hemisphere 8.7
2515 Male, age 75, right hemisphere 7.9
1905 Male, age 76, both hemispheres 6.6
Corticomedial amygdala
nTPM: 11.7
2829 Male, age 80, left hemisphere 14.4
2535 Female, age 67, right hemisphere 13.4
2242 Female, age 91, right hemisphere 12.8
2429 Female, age 94, left hemisphere 12.2
2240 Male, age 76, both hemispheres 9.5
2428 Male, age 75, right hemisphere 7.8
Lateral amygdala
nTPM: 9.2
2256 Male, age 80, left hemisphere 12.2
2255 Female, age 91, right hemisphere 12.0
2534 Female, age 94, left hemisphere 11.6
1883 Male, age 76, both hemispheres 8.6
2516 Male, age 75, right hemisphere 5.7
2830 Female, age 67, right hemisphere 5.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 4.9
Samples: 181

Max nTPM: 22.7
Min nTPM: 1.6
Std nTPM: 2.4
Median nTPM: 4.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 22.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 12.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 11.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 10.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 10.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 10.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 9.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 9.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 9.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 9.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 8.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 8.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 8.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 8.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 8.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 8.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 8.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 7.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 7.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 7.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 7.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 7.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 7.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 7.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 7.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 7.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 7.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 7.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 7.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 6.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 6.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 6.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 6.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 6.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 6.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 6.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 6.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 6.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 6.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 6.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 5.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 5.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 5.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 5.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 5.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 5.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 5.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 5.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 5.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 5.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 5.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 5.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 5.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 5.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 5.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 5.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 5.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 5.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 5.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 5.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 5.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 4.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 4.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 4.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 4.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 4.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 4.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 4.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 4.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 4.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 4.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 4.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 4.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 4.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 4.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 4.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 4.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 4.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 4.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 4.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 4.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 4.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 4.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 4.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 3.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 3.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 3.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 3.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 3.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 3.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 3.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 3.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 3.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 3.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 3.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 3.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 3.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 3.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 3.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 3.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 3.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 3.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 3.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 3.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 3.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 3.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 3.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 2.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 2.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 2.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 2.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 13.2
FF:10151-102I7 76 years, female 13.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.0
Pig sample Sample description nTPM
Amygdala
nTPM: 12.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.0
Sample A Female 15.5
Sample B Female 9.0
Sample C Male 10.5
Sample D Male 12.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 86.2
Samples: 4

Max nTPM: 93.0
Min nTPM: 76.4
Sample A Male 76.4
Sample B Male 88.6
Sample C Female 93.0
Sample D Female 86.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
68745516 Antisense, RP_050210_02_B02, Mouse strain C57BL/6J (56 days, male) 9.5

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